BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZB05FM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1653 1138 0.0
>3x_Contig1653
Length = 14012
Score = 1138 bits (574), Expect = 0.0
Identities = 649/667 (97%), Gaps = 8/667 (1%)
Strand = Plus / Minus
Query: 90 ctttcaacacaataagttacccgacaacggaagcaaccctccaaaattttgcggttttgg 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6470 ctttcaacacaataagttacccgacaacggaagcaaccctccaaaattttgcggttttgg 6411
Query: 150 cgtccacaaaacaggaatctcccccaatcttgatgaagatttttgattaactaatcatat 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6410 cgtccacaaaacaggaatctcccccaatcttgatgaagatttttgattaactaatcatat 6351
Query: 210 tgtggttcacgggcgttattcgagtcactaacttttccctttactaatgcgcacacatag 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6350 tgtggttcacgggcgttattcgagtcactaacttttccctttactaatgcgcacacatag 6291
Query: 270 agtatcagaataacttcgtcgaacgtgactatacacccatacatcactatactatctggc 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6290 agtatcagaataacttcgtcgaacgtgactatacacccatacatcactatactatctggc 6231
Query: 330 tgtatttcttccctgtgtttggttgtaaacagctctacatggattttttttttgtaacgc 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6230 tgtatttcttccctgtgtttggttgtaaacagctctacatggattttttttttgtaacgc 6171
Query: 390 aactacgagataaaaaaaaatgaccaagcaaaaaggattagcacctccttctaatactct 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6170 aactacgagataaaaaaaaatgaccaagcaaaaaggattagcacctccttctaatactct 6111
Query: 450 tattgcaagggggaaagaacagtaagcaggaaatcacgagaatgaactaaactgtaactc 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6110 tattgcaagggggaaagaacagtaagcaggaaatcacgagaatgaactaaactgtaactc 6051
Query: 510 cctatttctttgcctgaagctgatctgttgcatcacggaaaagtaatgcatcttcaatta 569
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 6050 cctatttctttgcctgaagctgatctgttgcatcacggaaaagtaatggatcttcaatta 5991
Query: 570 ctcatttacnacagttgcgcctagtaccaccactatcaaga-gacccgttccgttctact 628
||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 5990 ctcatttacaccagttgcgcctagtaccaccactatcaagaggacccgttccgttctact 5931
Query: 629 gtgaatatgacgatcactactgctattcgt--aaaacgatgtcaagtttccgaagca-tt 685
|||||||||||||||| ||||||| |||| ||||||||||||||||||||||||| ||
Sbjct: 5930 gtgaatatgacgatcataactgcta-tcgttaaaaacgatgtcaagtttccgaagcattt 5872
Query: 686 tcttacccgcactttcatgtaaggcctcc--aaattaatatggcggggtttttgcgtttt 743
||||||||||||| |||||||| |||||| |||||| ||| || |||||||||||||||
Sbjct: 5871 tcttacccgcactctcatgtaacgcctcccaaaattattat-gctgggtttttgcgtttt 5813
Query: 744 tgaatgc 750
|| ||||
Sbjct: 5812 tgtatgc 5806
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9065
Number of Sequences: 1807
Number of extensions: 9065
Number of successful extensions: 102
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)