BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZB05RM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1707 1243 0.0
>3x_Contig1707
Length = 16216
Score = 1243 bits (627), Expect = 0.0
Identities = 653/659 (99%), Gaps = 2/659 (0%)
Strand = Plus / Plus
Query: 39 gcttacacccagctcttcccagcttaattcattgaggtttaaatttgacccgtctaattc 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15083 gcttacacccagctcttcccagcttaattcattgaggtttaaatttgacccgtctaattc 15142
Query: 99 ttttagtatttcatcatcttcagttttcatagctttgatatccttgagtaaaggctcaat 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15143 ttttagtatttcatcatcttcagttttcatagctttgatatccttgagtaaaggctcaat 15202
Query: 159 ttgtccttcttctacatcacatgtttcgatacaatttaatactgcttcgacagccgttgg 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15203 ttgtccttcttctacatcacatgtttcgatacaatttaatactgcttcgacagccgttgg 15262
Query: 219 aatattctgtggtagtgatgtaacatgcaattttttaagtaactgagaatattgtttaaa 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15263 aatattctgtggtagtgatgtaacatgcaattttttaagtaactgagaatattgtttaaa 15322
Query: 279 gacccttttctgatctttgaacatggcactcaatgatgatagaagacgtatctcctctgg 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15323 gacccttttctgatctttgaacatggcactcaatgatgatagaagacgtatctcctctgg 15382
Query: 339 ggatctagtaagttcgtattctagaatggttctagacaatttcgtactgttgaaactcca 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15383 ggatctagtaagttcgtattctagaatggttctagacaatttcgtactgttgaaactcca 15442
Query: 399 aaaaatcttcaaaagtaagtgagtaaccgtattatccgcctcgccgtgttgtaaagattc 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15443 aaaaatcttcaaaagtaagtgagtaaccgtattatccgcctcgccgtgttgtaaagattc 15502
Query: 459 caataagcattcaagcgttttcagtatgtgttctacgacatcatcggattccatctgctt 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15503 caataagcattcaagcgttttcagtatgtgttctacgacatcatcggattccatctgctt 15562
Query: 519 aaaattctctttcgcatattggtagtgtagtattcccctatttctatacgc-aggtatcg 577
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 15563 aaaattctctttcgcatattggtagtgtagtattcccctatttctatacgcaaggtatcg 15622
Query: 578 aagcgaatcgagagtaggtggagaatactcgtatagaccccatttatttcgtttgatgac 637
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 15623 aagcgaatcgagagtaggtgaagaatactcgtatagaccccatttattcggtttgatgac 15682
Query: 638 atctatttcaaataacctgtcaaa-gtctctttagcatcggcgaaacgttttgccttca 695
|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 15683 atctatttcaaataacctgtcaaatgtctctttagcatcgtcgaaacgttttgccttca 15741
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7524
Number of Sequences: 1807
Number of extensions: 7524
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)