BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC33ZB06FM1.SCF screened BAC_end (907 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1188 1140 0.0 >3x_Contig1188 Length = 4443 Score = 1140 bits (575), Expect = 0.0 Identities = 696/719 (96%), Gaps = 16/719 (2%) Strand = Plus / Plus Query: 88 tgcgaaggattttcagcgttaaacaaaacgataaaaaggaatacgtgtgtccaattggca 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3672 tgcgaaggattttcagcgttaaacaaaacgataaaaaggaatacgtgtgtccaattggca 3731 Query: 148 aatttctcactgtaactatcaatccagctgtcttacagtagagaagcaatcaataatgtg 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3732 aatttctcactgtaactatcaatccagctgtcttacagtagagaagcaatcaataatgtg 3791 Query: 208 ttctaagttccaataaaaagtaagaatcattaactgaaaacagacacttcttgtttgttt 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3792 ttctaagttccaataaaaagtaagaatcattaactgaaaacagacacttcttgtttgttt 3851 Query: 268 taaaagggaaactatagctttgcaaatgtagtgaagaaaagactatcaaatgaatgatgt 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3852 taaaagggaaactatagctttgcaaatgtagtgaagaaaagactatcaaatgaatgatgt 3911 Query: 328 atatttgcttttagtaatttgttgctgctctcttattaaacgttatatgaccaaaagtgt 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3912 atatttgcttttagtaatttgttgctgctctcttattaaacgttatatgaccaaaagtgt 3971 Query: 388 agtgaatctgagcgtcaaataagggaacttgatgattaaaaaagaagcaaagaaacagcg 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3972 agtgaatctgagcgtcaaataagggaacttgatgattaaaaaagaagcaaagaaacagcg 4031 Query: 448 gcaattataatagcttgtatcaattattcctgtatgtaacacacttgctgctacaaccgc 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4032 gcaattataatagcttgtatcaattattcctgtatgtaacacacttgctgctacaaccgc 4091 Query: 508 ttatgactcgattgtgctgatagctctctggtgtgtgtgtgtgtatcttcctgacacctt 567 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4092 ttaggactcgattgtgctgatagctctctggtgtgtgtgtgtgtatcttcctgacacctt 4151 Query: 568 cggtaagtatatcattctttaaggagtggttctgtgcattctttcctttaatctgag-tt 626 |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || Sbjct: 4152 cggtaagtatatcattctttaaggggtggttctgtgcattctttccttaaatctgagttt 4211 Query: 627 tccctttatttta-tttttattttttttgaatgctgcagaa-gactacgtc-aattcatt 683 ||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct: 4212 tccctttattttattttttattttttttgaatgctgcagaaggactacgtcaaattcatt 4271 Query: 684 at-attatcaataa-gttcctatat-catagc-ttcacaat-aaagaga-tgtg-atatg 736 || ||||||||||| |||||||||| |||||| |||||||| ||||||| |||| ||||| Sbjct: 4272 ataattatcaataaggttcctatatccatagctttcacaataaaagagagtgtgtatatg 4331 Query: 737 tatgtatgca-tgactagnttaaaantatat-tatatatata---atatttaggacaat 790 |||||||||| ||||||| |||| ||||| |||||||||| |||||||||||||| Sbjct: 4332 tatgtatgcattgactagtataaatatatatatatatatatatatatatttaggacaat 4390 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8743 Number of Sequences: 1807 Number of extensions: 8743 Number of successful extensions: 169 Number of sequences better than 1.0e-20: 1 length of query: 907 length of database: 10,358,551 effective HSP length: 16 effective length of query: 891 effective length of database: 10,329,639 effective search space: 9203708349 effective search space used: 9203708349 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)