BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZB06RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1627 1334 0.0
>3x_Contig1627
Length = 15708
Score = 1334 bits (673), Expect = 0.0
Identities = 750/769 (97%), Gaps = 6/769 (0%)
Strand = Plus / Minus
Query: 43 gctttggaattgggcaataatgatgctatatcaaaatgttctgcaagaa-aacctacatc 101
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 6777 gctttggaattgggcaataatgatgctatatcaaaatgttctgcaagaacaacctacatc 6718
Query: 102 gtctactatcggtactgttccaaagaaacaccgaattcttatccacattacaggattttg 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6717 gtctactatcggtactgttccaaagaaacaccgaattcttatccacattacaggattttg 6658
Query: 162 aagactttgaaaagctgcacaagtttgtagaagagtggaataaactattaaccccataca 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6657 aagactttgaaaagctgcacaagtttgtagaagagtggaataaactattaaccccataca 6598
Query: 222 aacaagtcctctccgcagcatctttcaacaatcttttgaccactattgtcaaagatgttt 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6597 aacaagtcctctccgcagcatctttcaacaatcttttgaccactattgtcaaagatgttt 6538
Query: 282 gtccaataatagagaacaagtttctatccctacaatttaacgaattaggttctatcaaga 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6537 gtccaataatagagaacaagtttctatccctacaatttaacgaattaggttctatcaaga 6478
Query: 342 ttgagaaacagctatccattgttatcaaaactataagcatggacaattatcaattacgtg 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6477 ttgagaaacagctatccattgttatcaaaactataagcatggacaattatcaattacgtg 6418
Query: 402 agtggtttaagaagttaacccagatgtgtctcctcttaggatttgaagacgaccagtttg 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6417 agtggtttaagaagttaacccagatgtgtctcctcttaggatttgaagacgaccagtttg 6358
Query: 462 actcaagcactcaagatctaaaagatgacgtgctcaattcattgaactggttattgacat 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6357 actcaagcactcaagatctaaaagatgacgtgctcaattcattgaactggttattgacat 6298
Query: 522 cttctgaacgtatctcaataagacatcaacgtatcgacaaacggtagattggtgtcaaca 581
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 6297 cttctgaacgtatctcaataagacaacaacgtatcgacaaacggtagattggtgtcaaca 6238
Query: 582 catatataatatctgtagaggtctatagtgtcacatctctcttaacgtgntatttatagt 641
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 6237 catatataatatctgtagaggtctatagtgtcacatctctcttaacgtgtaatttatagt 6178
Query: 642 caaattcgntgtcactcttcacgagttgatctttcttttttcttcaggttccattttaac 701
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 6177 caaattcgttgtcactcttcacgagttgatctttc-tttttcttcaggttccattttaa- 6120
Query: 702 cctgaaattnagaaggtgaatatcacatttgnttgatgtttaccatttgttctaaggtag 761
||||||||| ||||| ||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 6119 cctgaaattaagaagttgaatatcacatttg-ttgatgtttaccatttg-tctaaggtag 6062
Query: 762 gtcatccncaaggcttaaaagc-acaaattcctgtggtttgcgatggat 809
|||||| |||||| ||||||| |||||| |||||| | |||||||||
Sbjct: 6061 gtcatcggcaaggcataaaagcaacaaatacctgtgtatcgcgatggat 6013
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6981
Number of Sequences: 1807
Number of extensions: 6981
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)