BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZB07RM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1799 1205 0.0
>3x_Contig1799
Length = 39855
Score = 1205 bits (608), Expect = 0.0
Identities = 738/767 (96%), Gaps = 12/767 (1%)
Strand = Plus / Plus
Query: 43 ctttcccttttttcattcatttttagcactttccatctcaatttgttgaaatacatgtag 102
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3067 ctttcccttttttcattcatttcgagcactttccatctcaatttgttgaaatacatgtag 3126
Query: 103 cattaaatgttgattttgttaaagactgtgaactactgccatattatcatgtcgtaacag 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3127 cattaaatgttgattttgttaaagactgtgaactactgccatattatcatgtcgtaacag 3186
Query: 163 aactattttccatgccaatgataggggagaatggtgaaaccatttctttcgatgatgtgg 222
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 3187 aactattttccatgccaatgataggggagaatggtgaaaccatttctttcgaggatgtgg 3246
Query: 223 tagctcagttaaaaactgaaactgttgaaactgacataagtatggggatcggtggaaatt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3247 tagctcagttaaaaactgaaactgttgaaactgacataagtatggggatcggtggaaatt 3306
Query: 283 tttccaacttaattgacttcaagattcaatgcaaagctacaaattactcgaaagcggtga 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3307 tttccaacttaattgacttcaagattcaatgcaaagctacaaattactcgaaagcggtga 3366
Query: 343 attggctcaaaagagttttatttgattctgtatttgatgaaagcagggtttcaattcttt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3367 attggctcaaaagagttttatttgattctgtatttgatgaaagcagggtttcaattcttt 3426
Query: 403 tagagaagttttacaactcaatcgttgaaactaaaagggaaggtgatcaaatgatgtttt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3427 tagagaagttttacaactcaatcgttgaaactaaaagggaaggtgatcaaatgatgtttt 3486
Query: 463 cttctatgaatagacatttatacaatgagggatcgttaaagaaatctgccgatgaattgt 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3487 cttctatgaatagacatttatacaatgagggatcgttaaagaaatctgccgatgaattgt 3546
Query: 523 acgttgaaccaatcattgaatcagtgttgacagatattgaggatggccactatattcaga 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3547 acgttgaaccaatcattgaatcagtgttgacagatattgaggatggccactatatccaga 3606
Query: 583 aaatttt-ccaaaaactgagtcattgagaact-aattaaccgaac-acttcac-aggccc 638
||||||| |||||| |||||||||||||||| |||||||||||| ||||||| ||||||
Sbjct: 3607 aaattttaccaaaacttgagtcattgagaactcaattaaccgaacaacttcacaaggccc 3666
Query: 639 atatctta--ttttggcgatattgata-gttgggagaaatttatgaaccttggacccg-t 694
|||||||| |||||||||||||||| ||||||||| |||||||||||||||| ||| |
Sbjct: 3667 atatcttagtatttggcgatattgataggttgggagatatttatgaaccttggagccgtt 3726
Query: 695 acttcgctccaaagcct-aaaattta-ccaccgttcctggtactgttccattgacaccat 752
|||||||||||||| || ||||| || ||||||| ||| |||||||||| |||||||||
Sbjct: 3727 acttcgctccaaaggctaaaaatatacccaccgtcactgttactgttccactgacaccat 3786
Query: 753 tgctgacctcca-tttatttgaag-tggaaaaaatcccataaaaaag 797
|||||||||||| ||||| ||||| |||||||||||| |||||||||
Sbjct: 3787 tgctgacctccagtttatctgaagttggaaaaaatccaataaaaaag 3833
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8572
Number of Sequences: 1807
Number of extensions: 8572
Number of successful extensions: 73
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)