BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC33ZB08FM1.SCF screened BAC_end
         (932 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig390                                                          924   0.0  

>3x_Contig390 
          Length = 1860

 Score =  924 bits (466), Expect = 0.0
 Identities = 466/466 (100%)
 Strand = Plus / Minus

                                                                       
Query: 86  cgttagtgcgtacatttgaaaagaacttgatgcttcatctctatcctcgtacgtcaattg 145
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 cgttagtgcgtacatttgaaaagaacttgatgcttcatctctatcctcgtacgtcaattg 409

                                                                       
Query: 146 acgttcaagttcatgctctacagttagatggtgggattcttggggcaatgcttaatggaa 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 acgttcaagttcatgctctacagttagatggtgggattcttggggcaatgcttaatggaa 349

                                                                       
Query: 206 taacattggctctgatagatgctggtatcgcaatgtatgattttgtaagcggggtttcag 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 taacattggctctgatagatgctggtatcgcaatgtatgattttgtaagcggggtttcag 289

                                                                       
Query: 266 tgggactttatgatactacaccactactagaccttaactcgcttgaggaaaatgcaatga 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tgggactttatgatactacaccactactagaccttaactcgcttgaggaaaatgcaatga 229

                                                                       
Query: 326 gcagtgttaccataggcacaattggtaaatcagaaaaattatctttattaatggtggaag 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 gcagtgttaccataggcacaattggtaaatcagaaaaattatctttattaatggtggaag 169

                                                                       
Query: 386 ataaagtgcctttggatagacttgagagtgtcatggccatcggaatagcaggcactcaca 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 ataaagtgcctttggatagacttgagagtgtcatggccatcggaatagcaggcactcaca 109

                                                                       
Query: 446 gaattagagatttaatggataaggagcttagaaagcatggaaaaacaagagttgaaaact 505
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 gaattagagatttaatggataaggagcttagaaagcatggaaaaacaagagttgaaaact 49

                                                         
Query: 506 cttcgaattgatttttaaaccattaattataaacttcacataacat 551
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48  cttcgaattgatttttaaaccattaattataaacttcacataacat 3


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7146
Number of Sequences: 1807
Number of extensions: 7146
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)