BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC33ZB09FM1.SCF screened BAC_end (912 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1241 961 0.0 >3x_Contig1241 Length = 5349 Score = 961 bits (485), Expect = 0.0 Identities = 594/615 (96%), Gaps = 13/615 (2%) Strand = Plus / Minus Query: 93 ccttcttgacgattcctttgattgaggagggatagctgcctcataattgatatccaaatg 152 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2403 ccttcttgacgattcctttgattgaggagggatagctgcctcataattgatatccaaatg 2344 Query: 153 ggtaggaatactattttctagagctcttttgatctgaggttggaaaaggtttagcatttt 212 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2343 ggtaggaatactattttctagagctcttttgatctgaggttggaaaaggtttagcatttt 2284 Query: 213 cttgccactcattggtgagactttgaaccagtaccagaatgtaattctcatggactccct 272 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2283 cttgccactcattggtgagactttgaaccagtaccagaatgtaattctcatggactccct 2224 Query: 273 tatggttgtctgagcgtctgttaaccctttttgcaaccattcctcgacgtagacatgatg 332 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2223 tatggttgtctgagcgtctgttaaccctttttgcaaccattcctcgacgtagacatgatg 2164 Query: 333 ttgcgatatcaacctcttatggaaccttactattagaattctgaggaaagtggaagaata 392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2163 ttgcgatatcaacctcttatggaaccttactattagaattctgaggaaagtggaagaata 2104 Query: 393 tagccttgatacgttatttttatctctgattaacgcaaaacagtgattgaatagtcgtga 452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2103 tagccttgatacgttatttttatctctgattaacgcaaaacagtgattgaatagtcgtga 2044 Query: 453 atggaatgggacagtagatagtaacgttatgagacaaataaacgcattttgattggcgat 512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2043 atggaatgggacagtagatagtaacgttatgagacaaataaacgcattttgattggcgat 1984 Query: 513 ttttctggtatttgacatcaatttggc-aggcatgaccaaa-gttttcgat-attgagat 569 ||| |||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| Sbjct: 1983 tttcttggtatttgacatcaatttggcaaggcatgaccaaaggttttcgataattgagat 1924 Query: 570 atcc-acatgggattg-aaacacagcaatagtcttttcac--agctgcaaccgt-ggtac 624 |||| |||||| |||| ||||||||||| ||| |||||| |||||||||||| ||||| Sbjct: 1923 atccaacatggaattgaaaacacagcaaaggtc-tttcaccaagctgcaaccgtgggtac 1865 Query: 625 ataga-aag-tcttaacgaaa-ggccgattta-tgacgcantattggaaatttagatctt 680 | ||| ||| ||||||||||| |||||||||| ||||||| ||||| ||||||||||||| Sbjct: 1864 aaagagaagttcttaacgaaagggccgatttagtgacgcagtattgtaaatttagatctt 1805 Query: 681 tccatagttctaaaa 695 ||||||||||||||| Sbjct: 1804 tccatagttctaaaa 1790 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5489 Number of Sequences: 1807 Number of extensions: 5489 Number of successful extensions: 39 Number of sequences better than 1.0e-20: 1 length of query: 912 length of database: 10,358,551 effective HSP length: 16 effective length of query: 896 effective length of database: 10,329,639 effective search space: 9255356544 effective search space used: 9255356544 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)