BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZB09FM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1241 961 0.0
>3x_Contig1241
Length = 5349
Score = 961 bits (485), Expect = 0.0
Identities = 594/615 (96%), Gaps = 13/615 (2%)
Strand = Plus / Minus
Query: 93 ccttcttgacgattcctttgattgaggagggatagctgcctcataattgatatccaaatg 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2403 ccttcttgacgattcctttgattgaggagggatagctgcctcataattgatatccaaatg 2344
Query: 153 ggtaggaatactattttctagagctcttttgatctgaggttggaaaaggtttagcatttt 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2343 ggtaggaatactattttctagagctcttttgatctgaggttggaaaaggtttagcatttt 2284
Query: 213 cttgccactcattggtgagactttgaaccagtaccagaatgtaattctcatggactccct 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2283 cttgccactcattggtgagactttgaaccagtaccagaatgtaattctcatggactccct 2224
Query: 273 tatggttgtctgagcgtctgttaaccctttttgcaaccattcctcgacgtagacatgatg 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2223 tatggttgtctgagcgtctgttaaccctttttgcaaccattcctcgacgtagacatgatg 2164
Query: 333 ttgcgatatcaacctcttatggaaccttactattagaattctgaggaaagtggaagaata 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2163 ttgcgatatcaacctcttatggaaccttactattagaattctgaggaaagtggaagaata 2104
Query: 393 tagccttgatacgttatttttatctctgattaacgcaaaacagtgattgaatagtcgtga 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2103 tagccttgatacgttatttttatctctgattaacgcaaaacagtgattgaatagtcgtga 2044
Query: 453 atggaatgggacagtagatagtaacgttatgagacaaataaacgcattttgattggcgat 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2043 atggaatgggacagtagatagtaacgttatgagacaaataaacgcattttgattggcgat 1984
Query: 513 ttttctggtatttgacatcaatttggc-aggcatgaccaaa-gttttcgat-attgagat 569
||| |||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||
Sbjct: 1983 tttcttggtatttgacatcaatttggcaaggcatgaccaaaggttttcgataattgagat 1924
Query: 570 atcc-acatgggattg-aaacacagcaatagtcttttcac--agctgcaaccgt-ggtac 624
|||| |||||| |||| ||||||||||| ||| |||||| |||||||||||| |||||
Sbjct: 1923 atccaacatggaattgaaaacacagcaaaggtc-tttcaccaagctgcaaccgtgggtac 1865
Query: 625 ataga-aag-tcttaacgaaa-ggccgattta-tgacgcantattggaaatttagatctt 680
| ||| ||| ||||||||||| |||||||||| ||||||| ||||| |||||||||||||
Sbjct: 1864 aaagagaagttcttaacgaaagggccgatttagtgacgcagtattgtaaatttagatctt 1805
Query: 681 tccatagttctaaaa 695
|||||||||||||||
Sbjct: 1804 tccatagttctaaaa 1790
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5489
Number of Sequences: 1807
Number of extensions: 5489
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)