BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC33ZB10FM1.SCF screened BAC_end (961 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1241 1094 0.0 >3x_Contig1241 Length = 5349 Score = 1094 bits (552), Expect = 0.0 Identities = 644/664 (96%), Gaps = 8/664 (1%) Strand = Plus / Minus Query: 89 ccttcttgacgattcctttgattgaggagggatagctgcctcataattgatatccaaatg 148 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2403 ccttcttgacgattcctttgattgaggagggatagctgcctcataattgatatccaaatg 2344 Query: 149 ggtaggaatactattttctagagctcttttgatctgaggttggaaaaggtttagcatttt 208 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2343 ggtaggaatactattttctagagctcttttgatctgaggttggaaaaggtttagcatttt 2284 Query: 209 cttgccactcattggtgagactttgaaccagtaccagaatgtaattctcatggactccct 268 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2283 cttgccactcattggtgagactttgaaccagtaccagaatgtaattctcatggactccct 2224 Query: 269 tatggttgtctgagcgtctgttaaccctttttgcaaccattcctcgacgtagacatgatg 328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2223 tatggttgtctgagcgtctgttaaccctttttgcaaccattcctcgacgtagacatgatg 2164 Query: 329 ttgcgatatcaacctcttatggaaccttactattagaattctgaggaaagtggaagaata 388 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2163 ttgcgatatcaacctcttatggaaccttactattagaattctgaggaaagtggaagaata 2104 Query: 389 tagccttgatacgttatttttatctctgattaacgcaaaacagtgattgaatagtcgtga 448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2103 tagccttgatacgttatttttatctctgattaacgcaaaacagtgattgaatagtcgtga 2044 Query: 449 atggaatgggacagtagatagtaacgttatgagacaaataaacgcattttgattggcgat 508 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2043 atggaatgggacagtagatagtaacgttatgagacaaataaacgcattttgattggcgat 1984 Query: 509 tttctttggtatttgacatcaatttggcaaggcatgaccaaaagttnttcgataattgag 568 |||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct: 1983 tttc-ttggtatttgacatcaatttggcaaggcatgaccaaaggtt-ttcgataattgag 1926 Query: 569 atattcaacatggaattgaaaacacagcaaaagtctttcaccaagctgcaaccggggggt 628 |||| |||||||||||||||||||||||||| ||||||||||||||||||||| | |||| Sbjct: 1925 atatccaacatggaattgaaaacacagcaaaggtctttcaccaagctgcaacc-gtgggt 1867 Query: 629 acaaagagaaggttcttaacgaaagggccgattttatgacccagtaatgtaaattttaaa 688 |||||||||| ||||||||||||||||||||||| |||| ||||| |||||| |||| | Sbjct: 1866 acaaagagaa-gttcttaacgaaagggccgatttagtgacgcagtattgtaaa-tttaga 1809 Query: 689 tctttccatagtttctaaaaatttgtcccgggatttcaaggggaaacctttcctaagaca 748 ||||||||||| |||||||||||||| |||||| ||||| |||||| |||||||||||| Sbjct: 1808 tctttccatag-ttctaaaaatttgt-ccgggaattcaa-tggaaacgtttcctaagaca 1752 Query: 749 atgg 752 |||| Sbjct: 1751 atgg 1748 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6915 Number of Sequences: 1807 Number of extensions: 6915 Number of successful extensions: 55 Number of sequences better than 1.0e-20: 1 length of query: 961 length of database: 10,358,551 effective HSP length: 16 effective length of query: 945 effective length of database: 10,329,639 effective search space: 9761508855 effective search space used: 9761508855 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)