BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC33ZB10FM1.SCF screened BAC_end
         (961 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1241                                                        1094   0.0  

>3x_Contig1241 
          Length = 5349

 Score = 1094 bits (552), Expect = 0.0
 Identities = 644/664 (96%), Gaps = 8/664 (1%)
 Strand = Plus / Minus

                                                                        
Query: 89   ccttcttgacgattcctttgattgaggagggatagctgcctcataattgatatccaaatg 148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2403 ccttcttgacgattcctttgattgaggagggatagctgcctcataattgatatccaaatg 2344

                                                                        
Query: 149  ggtaggaatactattttctagagctcttttgatctgaggttggaaaaggtttagcatttt 208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2343 ggtaggaatactattttctagagctcttttgatctgaggttggaaaaggtttagcatttt 2284

                                                                        
Query: 209  cttgccactcattggtgagactttgaaccagtaccagaatgtaattctcatggactccct 268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2283 cttgccactcattggtgagactttgaaccagtaccagaatgtaattctcatggactccct 2224

                                                                        
Query: 269  tatggttgtctgagcgtctgttaaccctttttgcaaccattcctcgacgtagacatgatg 328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2223 tatggttgtctgagcgtctgttaaccctttttgcaaccattcctcgacgtagacatgatg 2164

                                                                        
Query: 329  ttgcgatatcaacctcttatggaaccttactattagaattctgaggaaagtggaagaata 388
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2163 ttgcgatatcaacctcttatggaaccttactattagaattctgaggaaagtggaagaata 2104

                                                                        
Query: 389  tagccttgatacgttatttttatctctgattaacgcaaaacagtgattgaatagtcgtga 448
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2103 tagccttgatacgttatttttatctctgattaacgcaaaacagtgattgaatagtcgtga 2044

                                                                        
Query: 449  atggaatgggacagtagatagtaacgttatgagacaaataaacgcattttgattggcgat 508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2043 atggaatgggacagtagatagtaacgttatgagacaaataaacgcattttgattggcgat 1984

                                                                        
Query: 509  tttctttggtatttgacatcaatttggcaaggcatgaccaaaagttnttcgataattgag 568
            |||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 1983 tttc-ttggtatttgacatcaatttggcaaggcatgaccaaaggtt-ttcgataattgag 1926

                                                                        
Query: 569  atattcaacatggaattgaaaacacagcaaaagtctttcaccaagctgcaaccggggggt 628
            |||| |||||||||||||||||||||||||| ||||||||||||||||||||| | ||||
Sbjct: 1925 atatccaacatggaattgaaaacacagcaaaggtctttcaccaagctgcaacc-gtgggt 1867

                                                                        
Query: 629  acaaagagaaggttcttaacgaaagggccgattttatgacccagtaatgtaaattttaaa 688
            |||||||||| |||||||||||||||||||||||  |||| ||||| |||||| |||| |
Sbjct: 1866 acaaagagaa-gttcttaacgaaagggccgatttagtgacgcagtattgtaaa-tttaga 1809

                                                                        
Query: 689  tctttccatagtttctaaaaatttgtcccgggatttcaaggggaaacctttcctaagaca 748
            ||||||||||| |||||||||||||| |||||| |||||  |||||| ||||||||||||
Sbjct: 1808 tctttccatag-ttctaaaaatttgt-ccgggaattcaa-tggaaacgtttcctaagaca 1752

                
Query: 749  atgg 752
            ||||
Sbjct: 1751 atgg 1748


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6915
Number of Sequences: 1807
Number of extensions: 6915
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)