BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZB11FM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig798 1255 0.0
>3x_Contig798
Length = 3073
Score = 1255 bits (633), Expect = 0.0
Identities = 709/727 (97%), Gaps = 6/727 (0%)
Strand = Plus / Plus
Query: 87 catggaaggcatcagacggaggacctgccttcaaggaagaaaaaaacaagataaagggtt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 catggaaggcatcagacggaggacctgccttcaaggaagaaaaaaacaagataaagggtt 342
Query: 147 aaaacagagcagtggtttggaatcagttttgtaatttaaaattgcagcttatctcaacct 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aaaacagagcagtggtttggaatcagttttgtaatttaaaattgcagcttatctcaacct 402
Query: 207 aagcaattcgcatttaaccccacttccgactctaagctctgtttgccttatagaacagga 266
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 403 aagcaattcgcatttaaccccacttccgactctaagctctgtttgccttagagaacagga 462
Query: 267 tatttttggatcttcttttatcgaccttgattttacgaaacagttttgggtcaaattttt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tatttttggatcttcttttatcgaccttgattttacgaaacagttttgggtcaaattttt 522
Query: 327 cctcttcaaacgagtctaaagcgtaatcatctggaatgaactgatgtaatggtacatgct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 cctcttcaaacgagtctaaagcgtaatcatctggaatgaactgatgtaatggtacatgct 582
Query: 387 ccaagtttctactataatagcctgccctgacgttatccaatttttgttgcaattccaatc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ccaagtttctactataatagcctgccctgacgttatccaatttttgttgcaattccaatc 642
Query: 447 tttttttgtcatccacgaaagtcctaccagaggcatggttttgaaactcaatcatctcac 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tttttttgtcatccacgaaagtcctaccagaggcatggttttgaaactcaatcatctcac 702
Query: 507 taactgaaaggtctacttcctcttgcaattctcttggtaactcggtcaagttacaggaat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 taactgaaaggtctacttcctcttgcaattctcttggtaactcggtcaagttacaggaat 762
Query: 567 gctgatccctcaattccgtcttcttggccaggctcttattcttacttttccccatcagcg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 gctgatccctcaattccgtcttcttggccaggctcttattcttacttttccccatcagcg 822
Query: 627 caatatctaagaactcattttctgtctctctaaacttgaaggcgaattcatcctttactt 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 caatatctaagaactcattttctgtctctctaaacttgaaggcgaattcatcctttactt 882
Query: 687 cactgctccctttgctggttttgggacgagnaagaagaaggatggggacatttaaacgng 746
|||||||||| ||||||||||| ||||||| ||||||| | ||||| |||||||||
Sbjct: 883 cactgctccc-ttgctggtttttggacgaggaagaagaggaatgggacaatttaaacgga 941
Query: 747 aacaatgacaacataatctttctttaccgcgtaatatttataatgggaagcggccgccaa 806
|||||||||||||| ||||||| ||| ||||||||| ||| ||| ||||||||||| |||
Sbjct: 942 aacaatgacaacat-atctttc-ttaacgcgtaata-ttaaaat-ggaagcggccg-caa 996
Query: 807 aacacac 813
|||||||
Sbjct: 997 aacacac 1003
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6294
Number of Sequences: 1807
Number of extensions: 6294
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)