BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZB11RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1742 969 0.0
>3x_Contig1742
Length = 17167
Score = 969 bits (489), Expect = 0.0
Identities = 613/640 (95%), Gaps = 11/640 (1%)
Strand = Plus / Minus
Query: 265 gatacaatcatatagaaatacagctgcactcattgcccatgattcttgtggttggttcat 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7791 gatacaatcatatagaaatacagctgcactcattgcccatgattcttgtggttggttcat 7732
Query: 325 cattgaaacatgtaaaagctctttacacttgggtaaaatctgtgttacaagagaaatgtc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7731 cattgaaacatgtaaaagctctttacacttgggtaaaatctgtgttacaagagaaatgtc 7672
Query: 385 cttataggtccattcattagaatcaaaatgtaatctttttagagaagggaaacgcggtag 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7671 cttataggtccattcattagaatcaaaatgtaatctttttagagaagggaaacgcggtag 7612
Query: 445 atatttgttcaaataaggaaagattgcagggaataatgaaggcaatcccgatagatctaa 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7611 atatttgttcaaataaggaaagattgcagggaataatgaaggcaatcccgatagatctaa 7552
Query: 505 gaaataaagtttcggtaattttgatagttcccttataatcaatgcagcctcttgcaccga 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7551 gaaataaagtttcggtaattttgatagttcccttataatcaatgcagcctcttgcaccga 7492
Query: 565 ttgaatgtttgttgaattcaatgtgaagtattgtaatgagtcgaagctgcgttgcgaaag 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7491 ttgaatgtttgttgaattcaatgtgaagtattgtaatgagtcgaagctgcgttgcgaaag 7432
Query: 625 ctcttttgat-attggttntgtcaaattttcg-agtcatt-aatgccaaattcaca-cga 680
||| |||||| ||||||| ||||||||||||| ||||||| |||||||||| ||| |||
Sbjct: 7431 ctc-tttgataattggttttgtcaaattttcgaagtcattaaatgccaaatcaacaccga 7373
Query: 681 tgatatcattttcagacatcccatct-aatagaatttctaactggtctgaggaagctatc 739
||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||
Sbjct: 7372 tgatatcattttcagacat-ccatctaaatagaatttctaactgttctgaggaagctatc 7314
Query: 740 tgagattgagcgagacccaacttacgtttccttgaaaattcgttctttagttga-gaaaa 798
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 7313 tgagattgagcgagacccaacttacgtttccttgaaaattcgttc-ttagttgaggaaaa 7255
Query: 799 cgcgtttattctattttccgaagtgtgcaagtttatgggcatag-aacaccctggaggag 857
||||||||| ||||||| ||||||||||||| ||| | || |||||| | ||||||
Sbjct: 7254 cgcgtttatcatattttcgaaagtgtgcaagttattggcaaaagaaacaccattgaggag 7195
Query: 858 tagctcttcctagtggtttaccttgtctcttgggcaagac 897
|||||||| ||||||||||||||||||||||| |||||||
Sbjct: 7194 tagctctt-ctagtggtttaccttgtctcttgtgcaagac 7156
Score = 387 bits (195), Expect = e-107
Identities = 209/211 (99%), Gaps = 2/211 (0%)
Strand = Plus / Minus
Query: 42 gcttagcagagtcattgagtcttatctaaaatat-accggctgtttcactgattagttca 100
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 8014 gcttagcagagtcattgag-cttatctaaaatattaccggctgtttcactgattagttca 7956
Query: 101 ccatcgaaaagtaaatcgtcctgcgatgaaagttcgtccaattgccaattagagtcaatt 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7955 ccatcgaaaagtaaatcgtcctgcgatgaaagttcgtccaattgccaattagagtcaatt 7896
Query: 161 gacttctgcgcgtttctaactaatgctattgctattcttgaattgatttcctctggaatg 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7895 gacttctgcgcgtttctaactaatgctattgctattcttgaattgatttcctctggaatg 7836
Query: 221 ttctcgtagttgaagtccaagttaatcaact 251
|||||||||||||||||||||||||||||||
Sbjct: 7835 ttctcgtagttgaagtccaagttaatcaact 7805
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6760
Number of Sequences: 1807
Number of extensions: 6760
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)