BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZB12FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig501 1322 0.0
>3x_Contig501
Length = 2416
Score = 1322 bits (667), Expect = 0.0
Identities = 744/768 (96%), Gaps = 2/768 (0%)
Strand = Plus / Plus
Query: 93 tctaggacaacaagcccaaacccagtgataatggaaatgaacaggaagataccaccatct 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 tctaggacaacaagcccaaacccagtgataatggaaatgaacaggaagataccaccatct 1015
Query: 153 ttggatctgaaagttaaaaaggaaccgtgataattatctgagaccggattcttattagcc 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 ttggatctgaaagttaaaaaggaaccgtgataattatctgagaccggattcttattagcc 1075
Query: 213 acttcggttattttatcccacatcttacctggagacccaatgatactggaaccaccacca 272
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1076 acttcggttagaagatcccacatcttacctggagacccaatgatactggaaccaccacca 1135
Query: 273 taaatgacaaatacaaagatgatcaaaaacaccaacaatgggaaagtatgcaaggcatca 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1136 taaatgacaaatacaaagatgatcaaaaacaccaacaatgggaaagtatgcaaggcatca 1195
Query: 333 gagatgaaggtagctcttagaccaccgaaatacacgtaaatggcacacaccaaaggtaat 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1196 gagatgaaggtagctcttagaccaccgaaatacacgtaaatggcacacaccaaaggtaat 1255
Query: 393 aaatacaacgcagcataagtattcatcccagtgatagcgttgatgacagcagcacctcct 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1256 aaatacaacgcagcataagtattcatcccagtgatagcgttgatgacagcagcacctcct 1315
Query: 453 aatagaatacaagcactaacaatagtgttacaaaccataccacaccatatgaaagccaaa 512
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1316 aatagaatacaagcactaacaatagtgttacaaaccataccacaccataggaaagccaaa 1375
Query: 513 tgtcctgcattaccgaatctcaaataaccagcttcaggaaacgtagtaaccaagtttgca 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1376 tgtcctgcattaccgaatctcaaataaccagcttcaggaaacgtagtaaccaagtttgca 1435
Query: 573 tttgccttaacttttgacgcaactatactgaagactgacacttggatcaacccaccaaca 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1436 tttgccttaacttttgacgcaactatactgaagactgacacttggatcaacccaccaaca 1495
Query: 633 gcatagaaataactnccagatatacccatattatacgactcagtggcagattgcancata 692
|||||||||||||| ||||||||||| |||||||||||||||||||||||||| || |
Sbjct: 1496 gcatagaaataactcccagatataccataattatacgactcagtggcagattgcaacaaa 1555
Query: 693 gtcaacgaccaacaccnagaactgacgatagaaacgaccatcaaaccctatggcacattt 752
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1556 gtcaacgaccaacaccaagaactgacgatagaaacgaccatcaaacctaatggcacattt 1615
Query: 753 cttgtagcagcgggtaattcatcagcctgtgatgatttattcgagaagaatctgttttgt 812
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1616 cttgaagcagcggtaaattcatcagcctgtgatgatttattcgagaagaatctgttttgt 1675
Query: 813 aaataagtgacaatg-tcatcaccaccgcgattaac-aaccaacacca 858
| ||||||||| ||| |||||||||| |||| ||| |||||||||||
Sbjct: 1676 agataagtgacgatgttcatcaccacggcgaagaacaaaccaacacca 1723
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5633
Number of Sequences: 1807
Number of extensions: 5633
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)