BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZB12RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1807 1223 0.0
>3x_Contig1807
Length = 66587
Score = 1223 bits (617), Expect = 0.0
Identities = 745/775 (96%), Gaps = 10/775 (1%)
Strand = Plus / Plus
Query: 44 ctttgcgtgccgtgctgtattgttcgacccgcagtcccgaagatctaagacgtttttcct 103
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 7561 ctttgcgtgccgtgctgtattgctcgacccgcagtcccgaagatctaagacgtttttcct 7620
Query: 104 atctctttgtgatgaggagaaaagcaacacggtacctaccaagagctgctaagaacattg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7621 atctctttgtgatgaggagaaaagcaacacggtacctaccaagagctgctaagaacattg 7680
Query: 164 aagtgtggtggtgccttgtctagaacaattgtttggtcaaatctaaatatttgtagaaat 223
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 7681 aagtgtggtggtgccttgtctagaacaattgtttggtcaaatctaaatatttgcagaaat 7740
Query: 224 tggttgactacattgagaaggagctggaaactattgcctctttcgagtcttatgacgacg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7741 tggttgactacattgagaaggagctggaaactattgcctctttcgagtcttatgacgacg 7800
Query: 284 gtgacgaaatacctcctaccataggcgatgtgcagcttatcgtgaactacctcaggttag 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7801 gtgacgaaatacctcctaccataggcgatgtgcagcttatcgtgaactacctcaggttag 7860
Query: 344 ctgctggagttgttgtgtgtataatttgaggctctactattaaatgtgtcaaaatttcgc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7861 ctgctggagttgttgtgtgtataatttgaggctctactattaaatgtgtcaaaatttcgc 7920
Query: 404 acatattacaatcacgtgattggttcagttatgcattttgtttcgtctcgaaatcggatc 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7921 acatattacaatcacgtgattggttcagttatgcattttgtttcgtctcgaaatcggatc 7980
Query: 464 taactttttcccttcgaaacctgaagtatttttgtagtttctagagctaatttaattgat 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7981 taactttttcccttcgaaacctgaagtatttttgtagtttctagagctaatttaattgat 8040
Query: 524 aactccaagggtatgacacttatgcaagattaactangctaaaatttgttcagccagtag 583
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 8041 aactccaagggtatgacacttaggcaagattaactaggctaaaatttgttcagccagtag 8100
Query: 584 gcatatcatactgttcaagctgtgcgctc-attttacttttgaatt-gttgagaaagagc 641
||| |||| |||||||||||||||||||| |||||||||| |||| |||||||||||||
Sbjct: 8101 gcaaatcaaactgttcaagctgtgcgctcaattttactttgaaattggttgagaaagagc 8160
Query: 642 tcatgttgcaaccaatgctttgagacaattatttatttcg-aaggctgagagaca-tttg 699
|||||| |||||||||||||||||||||||||||| |||| |||||||||||||| ||||
Sbjct: 8161 tcatgtggcaaccaatgctttgagacaattatttaattcgaaaggctgagagacattttg 8220
Query: 700 tctttgg-aagcgcccctgtttanc-atagtagcttacagaattagctt-agcggtttga 756
||||||| |||||||| |||||| | | ||||||| ||||||| ||||| |||| ||||
Sbjct: 8221 tctttggaaagcgcccttgtttagcaaaagtagctaacagaataagcttaagcgtattga 8280
Query: 757 tcccatttctttacat-ggaaactttgaa-gattatttactgact-attctgaaa 808
|||||||||||||||| | |||||||||| ||| || |||||||| |||||||||
Sbjct: 8281 tcccatttctttacatcgcaaactttgaaggataatctactgactaattctgaaa 8335
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6477
Number of Sequences: 1807
Number of extensions: 6477
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)