BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZC01FM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1542 1273 0.0
>3x_Contig1542
Length = 13810
Score = 1273 bits (642), Expect = 0.0
Identities = 685/694 (98%), Gaps = 4/694 (0%)
Strand = Plus / Minus
Query: 87 ctaacagggtacttaacttaatatttgatgctgaaaaacctggtatcattttgacaggtc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12845 ctaacagggtacttaacttaatatttgatgctgaaaaacctggtatcattttgacaggtc 12786
Query: 147 acgatcatgaaggttgcgaaactgtctataacaaagatgacaaaggcaattggactgcat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12785 acgatcatgaaggttgcgaaactgtctataacaaagatgacaaaggcaattggactgcat 12726
Query: 207 ccaaaacaacagatccaaaaaatctaaatatcaaagaaattactgtaaggtcgatgatgg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12725 ccaaaacaacagatccaaaaaatctaaatatcaaagaaattactgtaaggtcgatgatgg 12666
Query: 267 gagaataccatggaaacactggtctagtaacaggtcatttcaacgaagcaacaagacaat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12665 gagaataccatggaaacactggtctagtaacaggtcatttcaacgaagcaacaagacaat 12606
Query: 327 gggaatggagtttcaatttatgtccattttccattcagcatatatggtggtttaccaagg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12605 gggaatggagtttcaatttatgtccattttccattcagcatatatggtggtttaccaagg 12546
Query: 387 tagtcaccattataaccggctttttgtggtcgtcagcatttttcttctaattgacatgct 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12545 tagtcaccattataaccggctttttgtggtcgtcagcatttttcttctaattgacatgct 12486
Query: 447 gaaagcagcatattctgttgggtataccaacagtatggtatcttaacttgtaaatgcaac 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12485 gaaagcagcatattctgttgggtataccaacagtatggtatcttaacttgtaaatgcaac 12426
Query: 507 atcagatttattttggtcactgtatatattcgtactctatatttataattgatactgagg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12425 atcagatttattttggtcactgtatatattcgtactctatatttataattgatactgagg 12366
Query: 567 aaaacgttgagttagaagattgcaattttaagttgaaaatactgaagagagctgactgtg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12365 aaaacgttgagttagaagattgcaattttaagttgaaaatactgaagagagctgactgtg 12306
Query: 627 taaatagaacgggtgcatgtcctactcccgtttcacaagcttgcctggctttgatgaatc 686
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 12305 taaatagaacgggtgcatgtcctactcccgttccacaagcttgcctggctttgatgaatc 12246
Query: 687 cctttattcacgtgacctgttggttttgacatttggcctggacccaacaaatagaacaga 746
||||||||||||||||||||| ||||||||| || | || ||| ||||||||||||||||
Sbjct: 12245 cctttattcacgtgacctgtt-gttttgacaatt-gtcttgacgcaacaaatagaacaga 12188
Query: 747 tcaattctttctataattctatagccatatttaa 780
|||| |||||||||||||||| ||||||||||||
Sbjct: 12187 tcaa-tctttctataattcta-agccatatttaa 12156
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7524
Number of Sequences: 1807
Number of extensions: 7524
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)