BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC33ZC01RM1.SCF screened BAC_end
         (951 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1383                                                        1213   0.0  

>3x_Contig1383 
          Length = 6139

 Score = 1213 bits (612), Expect = 0.0
 Identities = 691/707 (97%), Gaps = 8/707 (1%)
 Strand = Plus / Plus

                                                                        
Query: 44   gcttgctatttgccagtcctgaatgttccaacatcaagcggacctctaatcggagaaact 103
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2187 gcttgctatttgccagtcctgaatgttccaacatcaagcggacctctaatcggagaaact 2246

                                                                        
Query: 104  aatgttgaagggttatttattgctagtggccactcttgttggggtattaacaacgctccg 163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2247 aatgttgaagggttatttattgctagtggccactcttgttggggtattaacaacgctccg 2306

                                                                        
Query: 164  gcaacaggtaaagttatgagtgaactattacttgacggtgaagctaaatccgctgatatt 223
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2307 gcaacaggtaaagttatgagtgaactattacttgacggtgaagctaaatccgctgatatt 2366

                                                                        
Query: 224  agtgcattggatcccagcttatactttgatgcatctatctttgaataaaatgaatccatt 283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2367 agtgcattggatcccagcttatactttgatgcatctatctttgaataaaatgaatccatt 2426

                                                                        
Query: 284  gcaaagtttttatgtgttttactatcatttcatttctttcattctgtcggcatataaaca 343
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2427 gcaaagtttttatgtgttttactatcatttcatttctttcattctgtcggcatataaaca 2486

                                                                        
Query: 344  tcaatcgatttctaacctctttaataatttaattactgccatcattatcccgttaaatat 403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2487 tcaatcgatttctaacctctttaataatttaattactgccatcattatcccgttaaatat 2546

                                                                        
Query: 404  ttttctatatcatgtattcagagaacacacaatttgcaaacccataaccattcattatca 463
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2547 ttttctatatcatgtattcagagaacacacaatttgcaaacccataaccattcattatca 2606

                                                                        
Query: 464  ttatatactgtatatttaccagttactatttaaaatctatgtggttcttgaaagaatgaa 523
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2607 ttatatactgtatatttaccagttactatttaaaatctatgtggttcttgaaagaatgaa 2666

                                                                        
Query: 524  gtttgaatggaaactccatattttcatttattcatattcttgaaagcagctctcgctcca 583
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2667 gtttgaatggaaactccatattttcatttattcatattcttgaaagcagctctcgctcca 2726

                                                                        
Query: 584  tttgcagcattcgtattgcttcttttctggttgttcagagtgtacaagta-ctctgcttt 642
            |||||||||| |||||||||||||||||| ||||||||||||||| |||| ||||||| |
Sbjct: 2727 tttgcagcatccgtattgcttcttttctgtttgttcagagtgtac-agtacctctgctct 2785

                                                                        
Query: 643  actacttgaaacaaacatataatcttgcggtgacttttcgtggcttttgataaantggaa 702
            |||||||||||||||||||| ||||||||||||| ||||||||| |||||| || |||||
Sbjct: 2786 actacttgaaacaaacatattatcttgcggtgac-tttcgtggc-tttgatgaagtggaa 2843

                                                           
Query: 703  caaggtttaaggccgggttcaaacttaaagttatcaaactttcttgg 749
            ||| |||| ||| ||| ||||||||| |||||||| |||||||||||
Sbjct: 2844 caa-gtttcagg-cggtttcaaactt-aagttatc-aactttcttgg 2886


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8074
Number of Sequences: 1807
Number of extensions: 8074
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)