BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZC02FM1.SCF screened BAC_end
(899 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig330 1481 0.0
>3x_Contig330
Length = 1954
Score = 1481 bits (747), Expect = 0.0
Identities = 801/814 (98%), Gaps = 4/814 (0%)
Strand = Plus / Minus
Query: 86 tcaataaaagggtttatcttttcctagcaattgtgtttaaaactcttcaaaaatcagaag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1160 tcaataaaagggtttatcttttcctagcaattgtgtttaaaactcttcaaaaatcagaag 1101
Query: 146 tgaacaagaatatggcataaagatactgtaatgaagatct-ctttaatgcaataaagtgt 204
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1100 tgaacaagaatatggcataaagatactgtaatgaagatcttctttaatgcaataaagtgt 1041
Query: 205 ttggaatgacaatcgatattggtagtattgagattatctatcatgtctataaattgagat 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1040 ttggaatgacaatcgatattggtagtattgagattatctatcatgtctataaattgagat 981
Query: 265 gatattgaatttacttttttccttttcattgttgtcaaatcaagattataaaatccaatg 324
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 980 gatatggaatttacttttt-ccttttcattgttgtcaaatcaagattataaaatccaatg 922
Query: 325 tcaatttaaaatataaaatctatgaaggaaagcgatgacatagaagatgcataaattatc 384
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 tcaattgaaaatataaaatctatgaaggaaagcgatgacatagaagatgcataaattatc 862
Query: 385 aatgttagtcaaattttacataaaagcaatctcaaattaacaacgaatctaagcgactgt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 aatgttagtcaaattttacataaaagcaatctcaaattaacaacgaatctaagcgactgt 802
Query: 445 tcacttcatcgcgtttggtattatttgcctcttcctccaaaactccgtaaatgatgtctt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcacttcatcgcgtttggtattatttgcctcttcctccaaaactccgtaaatgatgtctt 742
Query: 505 tgataatggtagcacctttttcatagtcactaggttcgttgaaaacctgaacagaaaatc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgataatggtagcacctttttcatagtcactaggttcgttgaaaacctgaacagaaaatc 682
Query: 565 taataaacaagtgactgttgttaatttggaatggcgcataacatttatactctgcgagca 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taataaacaagtgactgttgttaatttggaatggcgcataacatttatactctgcgagca 622
Query: 625 tgatcttatcacatttactcttaaagtttaagaaataaattctatcagtactcatctttt 684
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 621 tgatcttatcacatttactcttaaagtttaggaaataaattctatcagtactcatctttt 562
Query: 685 caatgagatgttgacattccgatttaatcggtaattctatacagaataatccgggtgaac 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caatgagatgttgacattccgatttaatcggtaattctatacagaataatccgggtgaac 502
Query: 745 gtaaagaattagtcgagttttcaagtagaacagatccttggccaataacctncataatct 804
||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct: 501 gtaaagaattagtcgagttttcaagtagaacagatccttggccaaaaacctccaaaatct 442
Query: 805 tttggatagcagcttcttgcaaatcccattgatattctcggatctttttcttcaccgccg 864
|| | ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 441 ttggaatagcagcttcttgcaaatcccattgatattctcgaatc-ttttcttcaccgccg 383
Query: 865 catatgtcccttacggaatttcaatgcttcctcc 898
||||||| ||||||||||||||||||||||||||
Sbjct: 382 catatgt-ccttacggaatttcaatgcttcctcc 350
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8037
Number of Sequences: 1807
Number of extensions: 8037
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 899
length of database: 10,358,551
effective HSP length: 16
effective length of query: 883
effective length of database: 10,329,639
effective search space: 9121071237
effective search space used: 9121071237
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)