BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZC02RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1769 1229 0.0
>3x_Contig1769
Length = 25795
Score = 1229 bits (620), Expect = 0.0
Identities = 707/730 (96%), Gaps = 5/730 (0%)
Strand = Plus / Plus
Query: 50 agttctacactaccaaccactcctcaggatgtcagtgctttgttaccgttacaaggtcat 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18785 agttctacactaccaaccactcctcaggatgtcagtgctttgttaccgttacaaggtcat 18844
Query: 110 gattcgttgttaatggaattttccccagaggaacctggcaacatcgcatctagtgtggat 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18845 gattcgttgttaatggaattttccccagaggaacctggcaacatcgcatctagtgtggat 18904
Query: 170 ccattattcccattgtatccctcgtccatgttaaccgctatgcccagcgacgcttttgca 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18905 ccattattcccattgtatccctcgtccatgttaaccgctatgcccagcgacgcttttgca 18964
Query: 230 acttatgaggatttcatcgcgaactaattcggaaacgcgcgttgtaatatagctcattct 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18965 acttatgaggatttcatcgcgaactaattcggaaacgcgcgttgtaatatagctcattct 19024
Query: 290 tattttttcactacccttctcttacttcacttaagaactttctattccaatagtatatta 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19025 tattttttcactacccttctcttacttcacttaagaactttctattccaatagtatatta 19084
Query: 350 ttactttcaattcttttattttttcccgttctttccatttgtatttttgtctaattgatt 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19085 ttactttcaattcttttattttttcccgttctttccatttgtatttttgtctaattgatt 19144
Query: 410 aagtattgattaatagaaagaatgaacttttttatttgactttacttctatcttcaggcc 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19145 aagtattgattaatagaaagaatgaacttttttatttgactttacttctatcttcaggcc 19204
Query: 470 agctgatccattctcttccctaatgatagaggatacctactttttcccatgatgccgatg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19205 agctgatccattctcttccctaatgatagaggatacctactttttcccatgatgccgatg 19264
Query: 530 caaaacctncatgcaaagaatgaaaaatcaccacacattgaaaaataagacatacagtta 589
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19265 caaaacctccaggcaaagaatgaaaaatcaccacacattgaaaaataagacatacagtta 19324
Query: 590 cccgtattttgatgtaaccctggcaattgttccctattttacttgttggttgtttgggtt 649
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
Sbjct: 19325 cccgtattttgatgtaaccctggcaattgttccctattttacttgttgtttgtttgtg-t 19383
Query: 650 tttctaatttttcccancaacatt-caacatttacaaaagtttctgttcagttttctccg 708
|||||| |||| |||| ||||||| || ||| ||| | ||||||||| || ||||||||
Sbjct: 19384 tttctatttttccccagcaacattccagcatctacgagagtttctgtccaagtttctccg 19443
Query: 709 cttcttcgttcctccatagntttttttttctcttttggaatcctgagacgaacccattcg 768
|||||||||| |||||||| |||||||||||| ||||||||| ||||||| ||||| |||
Sbjct: 19444 cttcttcgtttctccatag-tttttttttctc-tttggaatcatgagacg-acccagtcg 19500
Query: 769 aaagaaaaat 778
| ||||||||
Sbjct: 19501 agagaaaaat 19510
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8264
Number of Sequences: 1807
Number of extensions: 8264
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)