BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZC03FM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1785 1524 0.0
>3x_Contig1785
Length = 37935
Score = 1524 bits (769), Expect = 0.0
Identities = 849/864 (98%), Gaps = 9/864 (1%)
Strand = Plus / Plus
Query: 85 ttatggagttagacttattcttgcgttaggttgcaaaatcgaatagattacatcaatcat 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22876 ttatggagttagacttattcttgcgttaggttgcaaaatcgaatagattacatcaatcat 22935
Query: 145 ggtggcagaaattgggttcagtaatatctttcgtagaattgatctttgatatttgttcac 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22936 ggtggcagaaattgggttcagtaatatctttcgtagaattgatctttgatatttgttcac 22995
Query: 205 ttgcatggaacaatcataactatttaacaattttcatacgcacaatcgtgtgaacaaaca 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22996 ttgcatggaacaatcataactatttaacaattttcatacgcacaatcgtgtgaacaaaca 23055
Query: 265 cagattgagacatagatattctaaacatctatagaacaggtgctgatggataaattcgtc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23056 cagattgagacatagatattctaaacatctatagaacaggtgctgatggataaattcgtc 23115
Query: 325 ttctgaaacctaaggttttgggattttcaaactcttagatatcatgccgcaaccttgtat 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23116 ttctgaaacctaaggttttgggattttcaaactcttagatatcatgccgcaaccttgtat 23175
Query: 385 gaaaaacgccagaacagcgggatggaactcgtaccattcggatgctccgtagatgccaaa 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23176 gaaaaacgccagaacagcgggatggaactcgtaccattcggatgctccgtagatgccaaa 23235
Query: 445 tggaatgttttccgtaatatatcctttatgcacacaaaatgccatgacagcaactaggaa 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23236 tggaatgttttccgtaatatatcctttatgcacacaaaatgccatgacagcaactaggaa 23295
Query: 505 aagtgtagttggaattggtagaccttcaaaaaatttggatttacccgaggtgtcctttgg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23296 aagtgtagttggaattggtagaccttcaaaaaatttggatttacccgaggtgtcctttgg 23355
Query: 565 tacctgtgcaacggtgacattaaatcttgctaatctggctagaccgcaaagaacaaagaa 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23356 tacctgtgcaacggtgacattaaatcttgctaatctggctagaccgcaaagaacaaagaa 23415
Query: 625 tgacaagaataaaacgtccaatgttgattggaatccgatagcgaaggcaattgatgctgg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23416 tgacaagaataaaacgtccaatgttgattggaatccgatagcgaaggcaattgatgctgg 23475
Query: 685 agcaacaccaaaagatattagatcagcaagagaatccaactcttggcccattaaagatga 744
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23476 agcaacaccaaaagaaattagatcagcaagagaatccaactcttggcccattaaagatga 23535
Query: 745 tctgttccttagtcttgcaacacgcccatcgaaaaaatcgaag-acatccctagaaacat 803
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 23536 tctgttccttagtcttgcaacacgcccatcgaaaaaatcgaagaacatccctagaacaat 23595
Query: 804 -aagaaatgagctctttggacatagtgtggtttgccagtcaaagtggaccttaaacaac- 861
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 23596 aaagaaatgagctctttggacatagtgtggtttgccagtcaaagtgaaccttaaacaact 23655
Query: 862 tacgattgaat-aaacccactgnaaccg-tgagcattggga-gaaat-agccagatgt-g 916
||||||||||| |||||||||| ||||| ||||||||| || ||||| |||||||||| |
Sbjct: 23656 tacgattgaataaaacccactgaaaccgttgagcattgtgatgaaatcagccagatgtag 23715
Query: 917 atttcttatc-tgctgaagtggaa 939
|||||||||| |||||||||||||
Sbjct: 23716 atttcttatcatgctgaagtggaa 23739
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6065
Number of Sequences: 1807
Number of extensions: 6065
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)