BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC33ZC03RM1.SCF screened BAC_end
         (961 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1640                                                        1411   0.0  

>3x_Contig1640 
          Length = 15521

 Score = 1411 bits (712), Expect = 0.0
 Identities = 804/826 (97%), Gaps = 7/826 (0%)
 Strand = Plus / Minus

                                                                        
Query: 47   taccatctgcatgatacttggaggttcattcgattctggatcaat-aacttcttttctcg 105
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2019 taccatctgcatgatacttggaggttcattcgattctggatcaattaacttcttttctcg 1960

                                                                        
Query: 106  catgatactgttaagattttccaaggattccacaatagatggatgggaatgaatctcgtc 165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1959 catgatactgttaagattttccaaggattccacaatagatggatgggaatgaatctcgtc 1900

                                                                        
Query: 166  cataagtttctgtactttgacatgagcatccagatcctcgggtgatttgtcccatgacga 225
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1899 cataagtgtctgtactttgacatgagcatccagatcctcgggtgatttgtcccatgacga 1840

                                                                        
Query: 226  agcatatctcttgttttgtagaagaggaatgattgttctacaacttctttgagcagtaac 285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1839 agcatatctcttgttttgtagaagaggaatgattgttctacaacttctttgagcagtaac 1780

                                                                        
Query: 286  tgctccaaatgtggcagctcttatcccataacggaatacagaacgcgataacatgttttc 345
            ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 1779 tgctccaaatgtggcagctcttagcccagaacggaatacagaacgcgataacatgttttc 1720

                                                                        
Query: 346  tatatgaggattattgaagttccacagcaacaggaccggttaggtctcggatattctata 405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1719 tatatgaggattattgaagttccacagcaacaggaccggttaggtctcggatattctata 1660

                                                                        
Query: 406  ttttcttaatttagtatgcaagcggaaagataattgcgctttcacatttttttgaagttg 465
            || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1659 ttgtctgaatttagtatgcaagcggaaagataattgcgctttcacatttttttgaagttg 1600

                                                                        
Query: 466  ataaaatttcagaccttaacatgatggactgttatcgaacaggagtctgaaggtaataat 525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1599 ataaaatttcagaccttaacatgatggactgttatcgaacaggagtctgaaggtaataat 1540

                                                                        
Query: 526  tgaaggtgagcaccgactattttcatttgagcttgcaatatataaacaaatcgaactaca 585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1539 tgaaggtgagcaccgactattttcatttgagcttgcaatatataaacaaatcgaactaca 1480

                                                                        
Query: 586  atgaattcaacaccatctgtagagtatttaccatagatacgattcttaattgtgatatta 645
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1479 atgaattcaacaccatctgtagagtatttaccatagatacgattcttaattgtgatatta 1420

                                                                        
Query: 646  canacttggtcatttatacatgaaatactagttagcccgaagaatgtatgatgtagattt 705
            ||   |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 1419 caactttggtcatttatacatgaaatactagttagccggaagaatgtatgatgtagaatt 1360

                                                                        
Query: 706  ggcggatgctatgtgtacacatctagctagcaatgatat-acgaaaga-ttttagtgctt 763
            |||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct: 1359 ggcggatgctatgtgtacacatctagctagcaatgaaataacgaaagagttttagtgctt 1300

                                                                        
Query: 764  gatcactgccatcatcatgctgctttagtgtatcatatgcccaaggctatcttcgtaaaa 823
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1299 gatcactgccatcatcatgctgctttagtgtatcatatg-ccaaggctatcttcgtaaaa 1241

                                                          
Query: 824  tttcaagttgaggattttcanctacgaggaacttccatctattacc 869
             |||||  ||| || ||||| |||||| ||||||||||||||||||
Sbjct: 1240 -ttcaaagtga-gaatttcaactacga-gaacttccatctattacc 1198


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7030
Number of Sequences: 1807
Number of extensions: 7030
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)