BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZC04FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1396 1261 0.0
>3x_Contig1396
Length = 8488
Score = 1261 bits (636), Expect = 0.0
Identities = 675/688 (98%)
Strand = Plus / Plus
Query: 86 tcaaccttaactaaagataaccttctgaagtgtttgccaatttctgatgaggacgtgaag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4069 tcaaccttaactaaagataaccttctgaagtgtttgccaatttctgatgaggacgtgaag 4128
Query: 146 gaagtaaaagaggctcacaataatttcaagaaacttttacaagataaactcatgccgaat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4129 gaagtaaaagaggctcacaataatttcaagaaacttttacaagataaactcatgccgaat 4188
Query: 206 ttcaaaaagctaaacactgaaaaggacccagtctataagggtgagggtatttccattgtt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4189 ttcaaaaagctaaacactgaaaaggacccagtctataagggtgagggtatttccattgtt 4248
Query: 266 ggtgggggtaaatacactttgatggctcttccggttatcaaatctatcagaatgaatagc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4249 ggtgggggtaaatacactttgatggctcttccggttatcaaatctatcagaatgaatagc 4308
Query: 326 ggtttaacattgaaaagtagtgtcccaattgaaatcgttattccaccctctgataatgct 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4309 ggtttaacattgaaaagtagtgtcccaattgaaatcgttattccaccctctgataatgct 4368
Query: 386 gatagaaaagtttgtgaaaacataattcctaccatcgacccttcaggtttgacgaagtgt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4369 gatagaaaagtttgtgaaaacataattcctaccatcgacccttcaggtttgacgaagtgt 4428
Query: 446 gtctatttgtcagaattttttgattctgaaattttaaaagatatcacaggttaccaattg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4429 gtctatttgtcagaattttttgattctgaaattttaaaagatatcacaggttaccaattg 4488
Query: 506 aaatcattgtctctgttgatttctagctttgaaaaggtgctattattagatgcagacaat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4489 aaatcattgtctctgttgatttctagctttgaaaaggtgctattattagatgcagacaat 4548
Query: 566 tatgtcatcaactcattgggtaatttctttgatggtgatatcttccgtgaaacagggctt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4549 tatgtcatcaactcattgggtaatttctttgatggtgatatcttccgtgaaacagggctt 4608
Query: 626 attttgtggccagattattggagaaaggttcacagtccataattgtacgatattgtggac 685
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 4609 attttgtggccagattattggagaagggttcacagtccaaaattgtacgatattgtggac 4668
Query: 686 atttaagtccaagataagctggcttgcctcagcacagactatattaccaattcaaggctg 745
||| | ||||| |||||||||||| || ||||||||||||||| |||||||||||||||
Sbjct: 4669 attaaggtccaggataagctggctcgctacagcacagactatatcaccaattcaaggctg 4728
Query: 746 tttccagattcccatcccgcaaaaattc 773
|| ||||| ||| |||||||||| ||||
Sbjct: 4729 ttcccagagtccgatcccgcaaagattc 4756
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7029
Number of Sequences: 1807
Number of extensions: 7029
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)