BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZC04RM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1577 1094 0.0
>3x_Contig1577
Length = 10627
Score = 1094 bits (552), Expect = 0.0
Identities = 664/690 (96%), Gaps = 9/690 (1%)
Strand = Plus / Plus
Query: 45 tgcatttcaacccaagcctctatcacctttcttacctaatcaatcctgattattctggaa 104
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6016 tgcatttcaacc-aagcctctatcacctttcttacctaatcaatcctgattattctggaa 6074
Query: 105 ctgatttacttgaatgttaaagttaagaccctttggaaattggccaacaggcttcttttt 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6075 ctgatttacttgaatgttaaagttaagaccctttggaaattggccaacaggcttcttttt 6134
Query: 165 gtcttcaggaatatcgacataggtgaatgataccaagatatcatcttctggcaccccaag 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6135 gtcttcaggaatatcgacataggtgaatgataccaagatatcatcttctggcaccccaag 6194
Query: 225 agaagtgaggattcctgagataactcctagcggcacctgtatatatggcgacacggtact 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6195 agaagtgaggattcctgagataactcctagcggcacctgtatatatggcgacacggtact 6254
Query: 285 caataatttttcttcatcatcgtccaatgcaaaattttgaatcggttggaattcataatc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6255 caataatttttcttcatcatcgtccaatgcaaaattttgaatcggttggaattcataatc 6314
Query: 345 gaaaagatagaacactccgcggtgattcgtcttcaaattatctatctgtttcccatacag 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6315 gaaaagatagaacactccgcggtgattcgtcttcaaattatctatctgtttcccatacag 6374
Query: 405 cagtttccagacttccttgcatatgaatctaaccattcctaacgtgtccatcgagttaaa 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6375 cagtttccagacttccttgcatatgaatctaaccattcctaacgtgtccatcgagttaaa 6434
Query: 465 tgaaagattcgggttattgctgaaaa-tagtaattctgtcatcttactgcctatgccgct 523
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 6435 tgaaagattcgggttattgctgaaaattagtaattctgtcatcttactgcctatgccgct 6494
Query: 524 tcc-atcttgtataatctctcgg-aactttttccttttactcatcactggcatgccanag 581
||| ||||||||||||||||||| ||||||||||||| |||||||||||||| || ||
Sbjct: 6495 tccaatcttgtataatctctcggtaactttttcctttacttcatcactggcatggcaaag 6554
Query: 582 ttgggcgattagtttgtgagaagg-acatatttcagtttattcaa-gatagtttgngtat 639
|||||||||||||||||||||||| ||||||| |||||||||||| ||||||||| ||||
Sbjct: 6555 ttgggcgattagtttgtgagaaggtacatattccagtttattcaaggatagtttgtgtat 6614
Query: 640 ttctttatttatttcgccaga-gtttgttcaacagaacgcgaacctacccgggaatttt- 697
||||| |||||||||| |||| ||| |||||||||| |||||| ||| | ||||||||
Sbjct: 6615 ttcttcatttatttcgtcagatgttggttcaacagactgcgaacttacgctggaattttc 6674
Query: 698 atctaactgggctaaattatttctcaactg 727
|||||||||| ||||||| ||||||||||
Sbjct: 6675 atctaactggcttaaatta-ttctcaactg 6703
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9248
Number of Sequences: 1807
Number of extensions: 9248
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)