BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZC05FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1721 1189 0.0
>3x_Contig1721
Length = 17834
Score = 1189 bits (600), Expect = 0.0
Identities = 680/704 (96%), Gaps = 2/704 (0%)
Strand = Plus / Minus
Query: 87 tcactttctggctttatgaatacaagtttacctttatcaaagtattgcaattcatttcaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14412 tcactttctggctttatgaatacaagtttacctttatcaaagtattgcaattcatttcaa 14353
Query: 147 cagtatcattttgagtaatggacagtacacaacgatctcctagattaccggcgttaccgc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14352 cagtatcattttgagtaatggacagtacacaacgatctcctagattaccggcgttaccgc 14293
Query: 207 ctttgcagagtcaacaatctactcccaagaaagttgggaataatgagaggaggaggaggc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14292 ctttgcagagtcaacaatctactcccaagaaagttgggaataatgagaggaggaggaggc 14233
Query: 267 ctcctcctccaatactgacgagccctgtgactcctacatctggatcatctttcaccgtcg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14232 ctcctcctccaatactgacgagccctgtgactcctacatctggatcatctttcaccgtcg 14173
Query: 327 taccgtctagatcaagtgaaaagcagcagcctcagattgaccaacagcacctttattcat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14172 taccgtctagatcaagtgaaaagcagcagcctcagattgaccaacagcacctttattcat 14113
Query: 387 ctccttttgtcacagaggtaagtgtgagtgaaaagagggcgcctgctccgaaagtgtata 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14112 ctccttttgtcacagaggtaagtgtgagtgaaaagagggcgcctgctccgaaagtgtata 14053
Query: 447 tatcgcctttcgttggtgatccatctgtgtttcggtcacctgaaactcttccaaatagca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14052 tatcgcctttcgttggtgatccatctgtgtttcggtcacctgaaactcttccaaatagca 13993
Query: 507 gtttcagcattaatagcgatagtccagcttcacaatcagataataataattataataata 566
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13992 gtttcagcaataatagcgatagtccagcttcacaatcagataataataattataataata 13933
Query: 567 ataggctgtcttcttcttcaactttcagtattttcaccattaatgtaacgatgccaaata 626
|||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||
Sbjct: 13932 ataggctgtcttcttcttcaacttcaagtatattcaccaataatgtaacgatgccaaata 13873
Query: 627 ttgagtttgaaaggttccctagttcggattcgaaagatttcacaatgaaagctctgcccg 686
||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 13872 ttgagtttgaagggttcgctagttcggattcgaaagatatcacaatgaaagctctgccgg 13813
Query: 687 gcctacccccacgaacgtttctccggccctttttaacgcgggatcaaagactactggaac 746
||||||||||||||| ||||||||||| | ||||||||| | |||||||||||| |||
Sbjct: 13812 cactacccccacgaacg-ttctccggccc-tattaacgcggcaacaaagactactgcaac 13755
Query: 747 attttattgcacactgcattttacggggcccgttgtacaccgtt 790
|| | | | |||||||| |||||||||||||||| ||||||||
Sbjct: 13754 atctagtagtacactgcagtttacggggcccgttgaacaccgtt 13711
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7772
Number of Sequences: 1807
Number of extensions: 7772
Number of successful extensions: 241
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)