BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZC05RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1430 1405 0.0
>3x_Contig1430
Length = 7411
Score = 1405 bits (709), Expect = 0.0
Identities = 743/751 (98%), Gaps = 4/751 (0%)
Strand = Plus / Plus
Query: 53 taagattcggtgaatttactttgaaatccggtagagtatcaccatacttcttcaatttag 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2700 taagattcggtgaatttactttgaaatccggtagagtatcaccatacttcttcaatttag 2759
Query: 113 gactcttcaacaccggtaagttgctttcaaacttagccactgcttatgcaattgccatta 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2760 gactcttcaacaccggtaagttgctttcaaacttagccactgcttatgcaattgccatta 2819
Query: 173 tccaatctgaattgaagttcgatgtcatcttcggtcccgcttacaaaggtattccattag 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2820 tccaatctgaattgaagttcgatgtcatcttcggtcccgcttacaaaggtattccattag 2879
Query: 233 catcgatcgtttgtgtgaagttagctgaaatcggtggttcgaaattccaagatgtgaagt 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2880 catcgatcgtttgtgtgaagttagctgaaatcggtggttcgaaattccaagatgtgaagt 2939
Query: 293 atgccttcaacagaaaggaagccaaggaccatggtgaaggtggtaatatcgttggtgctg 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2940 atgccttcaacagaaaggaagccaaggaccatggtgaaggtggtaatatcgttggtgctg 2999
Query: 353 cactaaaggaccaaaaaatcttgatcatcgacgatgtcatgactgcaggaactgcaatca 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3000 cactaaaggaccaaaaaatcttgatcatcgacgatgtcatgactgcaggaactgcaatca 3059
Query: 413 acgaagcgtttgagatcattgccaaggaagaaggcaaagttgttggatccattatcgcat 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3060 acgaagcgtttgagatcattgccaaggaagaaggcaaagttgttggatccattatcgcat 3119
Query: 473 tagacagacaagaggtggttaacaccgaagacaccgaagttctaagtgctactcaatctg 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3120 tagacagacaagaggtggttaacaccgaagacaccgaagttctaagtgctactcaatctg 3179
Query: 533 tttctaagagatatgacatcccagttttaagtattgtcaacctgtcaaacattatcagct 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3180 tttctaagagatatgacatcccagttttaagtattgtcaacctgtcaaacattatcagct 3239
Query: 593 acttggatggcagaatctctgtggaagaaagggaanagatggaacattaccgtcaaactt 652
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 3240 acttggatggcagaatctctgtggaagaaagggaaaagatggaacaataccgtcaaactt 3299
Query: 653 atggtgcatctgcataatatcaccctcgaatctatcttaacatatataattatacatatt 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3300 atggtgcatctgcataatatcaccctcgaatctatcttaacatatataattatacatatt 3359
Query: 713 taaaacagacactgggaaacgccgcttcttgtttagatattttgggtgat-aaaatgaca 771
|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 3360 taaaacagacactgggaaacgccgcttcttgtttagatattt--ggtgataaaaatgaca 3417
Query: 772 gaagtattccatttaacgttctactacacgg 802
||||||||||| ||||||| ||||||||||
Sbjct: 3418 gaagtattcca-ttaacgtcttactacacgg 3447
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6470
Number of Sequences: 1807
Number of extensions: 6470
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)