BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZC06FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1403 1231 0.0
>3x_Contig1403
Length = 7711
Score = 1231 bits (621), Expect = 0.0
Identities = 747/781 (95%), Gaps = 7/781 (0%)
Strand = Plus / Minus
Query: 87 gttcactcacatcactccttacttcactatcttcgctcacgaaagaactgctaaggaaat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1065 gttcactcacatcactccttacttcactatcttcgctcacgaaagaactgctaaggaaat 1006
Query: 147 catcgacgaattcagaaagagagccgtcgacaacatcccagttggtccaaacttcgacga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 catcgacgaattcagaaagagagccgtcgacaacatcccagttggtccaaacttcgacga 946
Query: 207 cgaagaagatgaaggtgaagacttgtgtaactgtgaattctccttggcttatggtgctaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 cgaagaagatgaaggtgaagacttgtgtaactgtgaattctccttggcttatggtgctaa 886
Query: 267 gatcttgttgaacaagactcaattgagattgaagagagctagaagatacggtttgtgtgg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 gatcttgttgaacaagactcaattgagattgaagagagctagaagatacggtttgtgtgg 826
Query: 327 tcctaacggtgctggtaagtctactttgatgagagctatcgccaacggtcaagttgacgg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 tcctaacggtgctggtaagtctactttgatgagagctatcgccaacggtcaagttgacgg 766
Query: 387 tttcccaactcaagaagaatgtagaaccgtttacgtcgagcacgatatcgatggtactca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 tttcccaactcaagaagaatgtagaaccgtttacgtcgagcacgatatcgatggtactca 706
Query: 447 agctgacacctccgttgttgacttcgtcttcagcggtaacgtcggtaccaaggatgttat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 agctgacacctccgttgttgacttcgtcttcagcggtaacgtcggtaccaaggatgttat 646
Query: 507 cactgacaagttgagagaattcggtttctccgatgaaatgattgctatgccaattgcttc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 cactgacaagttgagagaattcggtttctccgatgaaatgattgctatgccaattgcttc 586
Query: 567 cctatctggtggtttggaagatgaagttggctttggctagagctgtgttgaagatcgctg 626
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 585 cctatctggtgg-ttggaagatgaagttggctttggctagagctgtgttgaagaacgctg 527
Query: 627 atatcttgttgttggatgatccancttaccatttggataccggcaacgntaactggttgg 686
||||||||||||||||||| ||| || ||||||||||||||| ||||| ||||||||| |
Sbjct: 526 atatcttgttgttggatgaaccaactaaccatttggataccgtcaacgttaactggtt-g 468
Query: 687 gttgaatacttgaacacccgtgggattacttncatcattgttt-ccacgactcccggtnt 745
|||||||||||||||||| |||| || |||| ||||||||||| |||||||| ||||| |
Sbjct: 467 gttgaatacttgaacacctgtggtatcacttccatcattgtttcccacgact-ccggttt 409
Query: 746 ctgggacaagggctgccattac-ttattcattaccaagggttgaaattgagaaagtccaa 804
|| |||||||| ||| || ||| |||| |||||| |||| ||||| |||||||||| |||
Sbjct: 408 cttggacaaggtctgtcaatacattatccattacgaaggtttgaagttgagaaagtacaa 349
Query: 805 ggggaacttggtcccatttcg-caagaaatgcccaactggtaattcttactaccaattgg 863
||| ||||| |||| | |||| |||||| |||||||||| ||| ||||||||| ||||||
Sbjct: 348 gggtaactt-gtccgaattcgtcaagaagtgcccaactgctaagtcttactacgaattgg 290
Query: 864 g 864
|
Sbjct: 289 g 289
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6122
Number of Sequences: 1807
Number of extensions: 6122
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)