BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZC06RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1315 1205 0.0
>3x_Contig1315
Length = 8846
Score = 1205 bits (608), Expect = 0.0
Identities = 716/739 (96%), Gaps = 10/739 (1%)
Strand = Plus / Plus
Query: 45 ctttacgtgttttagtgtttggaagttaaaataatgaaaaacctctaagttataaaaaca 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4944 ctttacgtgttttagtgtttggaagttaaaataatgaaaaacctctaagttataaaaaca 5003
Query: 105 attaaccgcaataacaaaaattcaaacaatgagtagcaattaaccacagaaacgtcaaaa 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5004 attaaccgcaataacaaaaattcaaacaatgagtagcaattaaccacagaaacgtcaaaa 5063
Query: 165 aaaagtaatcacaatcttacttattctaaagaatacaagatctgattccttacttatatt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5064 aaaagtaatcacaatcttacttattctaaagaatacaagatctgattccttacttatatt 5123
Query: 225 ttgttgacacacttatttcgtttcgagttccatttttagtttttgtgatttttcgtcttt 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5124 ttgttgacacacttatttcgtttcgagttccatttttagtttttgtgatttttcgtcttt 5183
Query: 285 ttcatcgaaatcgaaaaagggacacagatcatcaccaaatcagggtaatgttgaaaattc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5184 ttcatcgaaatcgaaaaagggacacagatcatcaccaaatcagggtaatgttgaaaattc 5243
Query: 345 tttcttataatccaattcgtcaataccaatttgaattgacgaagttcaaacagagttaga 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5244 tttcttataatccaattcgtcaataccaatttgaattgacgaagttcaaacagagttaga 5303
Query: 405 cgagcgacctagagaaactagtatctgtccctatcgattgaacttatcctttctcctctt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5304 cgagcgacctagagaaactagtatctgtccctatcgattgaacttatcctttctcctctt 5363
Query: 465 catcatagtatcataccagcagcgaaaataattagaggatgtcttttggagctgntacgg 524
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 5364 catcatagtatcataccagcagcgaaaataattagaggatgtcttttggagctgtaacgg 5423
Query: 525 aatc-tttagcagagtgttgctgggaacagcgacatcaatattgcctcgttggagcactc 583
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5424 aatcttttagcagagtgttgctggaaacagcgacatcaatattgcctcgttggagcactc 5483
Query: 584 cagcagctggtactgcattg-cacaggaactgctggaatttgcttg-aagata-caacgt 640
|||||||||||||||||||| ||||| ||||||||||| ||||||| |||| | ||||||
Sbjct: 5484 cagcagctggtactgcattgccacagaaactgctggaa-ttgcttgaaagaaaccaacgt 5542
Query: 641 g-aaagttctcacctcaagcgga-tactttacgattaacgggatccttttagctg-gccc 697
| ||||| |||||||||||||| |||||||||| ||||||||||||| |||||| ||||
Sbjct: 5543 gaaaagtcttcacctcaagcggattactttacgaataacgggatccttctagctgtgccc 5602
Query: 698 cagaagaaagtgtcgcatcagaag-agagacaaaagttttatgcccctggagac-aacag 755
||||||||||||||||||||||| ||||||||||||| ||||| ||||||||| |||||
Sbjct: 5603 aagaagaaagtgtcgcatcagaagaagagacaaaagttatatgcgcctggagacaaacag 5662
Query: 756 gtgaaaatgatcaaccatt 774
||||||||||||||||||
Sbjct: 5663 ctgaaaatgatcaaccatt 5681
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7176
Number of Sequences: 1807
Number of extensions: 7176
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)