BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZC07RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1186 1302 0.0
>3x_Contig1186
Length = 4633
Score = 1302 bits (657), Expect = 0.0
Identities = 735/755 (97%), Gaps = 5/755 (0%)
Strand = Plus / Plus
Query: 48 aattaactaaatacatttctccagaagaaaagaatactctaaagacacaactaattactg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 aattaactaaatacatttctccagaagaaaagaatactctaaagacacaactaattactg 958
Query: 108 atttgaaggcaattgatattaaggacaagaacagtaagaagcaagtactagccaagttta 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959 atttgaaggcaattgatattaaggacaagaacagtaagaagcaagtactagccaagttta 1018
Query: 168 ctgatgcaaagaacttcttgacgttatctgaagaggtgagactacgcagaaaattcttga 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 ctgatgcaaagaacttcttgacgttatctgaagaggtgagactacgcagaaaattcttga 1078
Query: 228 agccagtgaaaccagaaacagaattgaagaaattggaagaaccactcaaaccttccaaga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1079 agccagtgaaaccagaaacagaattgaagaaattggaagaaccactcaaaccttccaaga 1138
Query: 288 aaaatctaaccaccagacgttacaactacgaacaaaacacgatagatgtcattacaagac 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1139 aaaatctaaccaccagacgttacaactacgaacaaaacacgatagatgtcattacaagac 1198
Query: 348 caaagaccgatttcttgagcaaattgtaaatcttccccaagtcgttacgtaacaaaccat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1199 caaagaccgatttcttgagcaaattgtaaatcttccccaagtcgttacgtaacaaaccat 1258
Query: 408 ttagagccttgtacatattaacaaaagaaccacaacaatcatcatagtttaaactgaaaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1259 ttagagccttgtacatattaacaaaagaaccacaacaatcatcatagtttaaactgaaaa 1318
Query: 468 aaacgaaagttttttagagactatatatcatttggaaaggttaattccatattatatcgt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1319 aaacgaaagttttttagagactatatatcatttggaaaggttaattccatattatatcgt 1378
Query: 528 taacgtatttaatttgtctatatgtgtgagacaaaatccanaacatactcttacattact 587
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1379 taacgtatttaatttgtctatatgtgtgagacaaaatccaaaacatactcttacattact 1438
Query: 588 attttttttgatattggattgtttntgagtacaaaactatggcaggtgagcccttttgga 647
| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 1439 a-tttttttgatattggattgttttgaggtacaaaactatggcaggtgagccctattgga 1497
Query: 648 tcaaccaggaggc-attgagagatatcaacgatgtcattcatcttgctttgagcattatc 706
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1498 tcaaccaggaggcaattgagagatatcaacgatgtcattcatcttgctttgagcatcatc 1557
Query: 707 tttcatcaccgacagattaatgggtttcttgttagaaccatcatacctgatcttgccatt 766
|||||||||||||||| |||||| |||||| |||| ||||||||||||||||||||| |
Sbjct: 1558 -ttcatcaccgacagataaatggg-ttcttggtagagccatcatacctgatcttgccact 1615
Query: 767 tccagaattccgaaagggttccacaattttcaaga 801
|||| || |||||| |||||||||| ||||||||
Sbjct: 1616 tccaagataccgaaa-ggttccacaagtttcaaga 1649
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8495
Number of Sequences: 1807
Number of extensions: 8495
Number of successful extensions: 80
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)