BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC33ZC08FM1.SCF screened BAC_end (919 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1624 1065 0.0 >3x_Contig1624 Length = 12551 Score = 1065 bits (537), Expect = 0.0 Identities = 639/662 (96%), Gaps = 9/662 (1%) Strand = Plus / Minus Query: 86 tttcggtgaatctttcc-tacaactggtgaagaatttgtattgttccgattggagtgagc 144 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 11708 tttcggtgaatctttccatacaactggtgaagaatttgtattgttccgattggagtgagc 11649 Query: 145 ctgttttttctttttgaacttttctggtttgttgtcccttgctgtttctttattattgtt 204 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11648 ctgttttttctttttgaacttttctggtttgttgtcccttgctgtttctttattattgtt 11589 Query: 205 ttgttacttcctcaataggttagtttccaaatcgaatctgaatctgatccaagcttttca 264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11588 ttgttacttcctcaataggttagtttccaaatcgaatctgaatctgatccaagcttttca 11529 Query: 265 gattcattatttcaataaagaggttttagctttgaacaatcccagtccatagttgacaat 324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11528 gattcattatttcaataaagaggttttagctttgaacaatcccagtccatagttgacaat 11469 Query: 325 agtcgataggaaacatactaccaagagtatcgccagcggtgaagacattgctatcggtag 384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11468 agtcgataggaaacatactaccaagagtatcgccagcggtgaagacattgctatcggtag 11409 Query: 385 agacagtgatagcagaaagcaagttgatcaagatatcctacgtcttgctcctaaaaagaa 444 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 11408 agacagtgatagcagaaagcaagttgatcaagagatcctacgtcttgctcctaaaaagaa 11349 Query: 445 tcgcagagtttttttatactggaatcaagatctgttggtataactcttaattattgatct 504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11348 tcgcagagtttttttatactggaatcaagatctgttggtataactcttaattattgatct 11289 Query: 505 cctgcagaactcattgngaaatt-gtaatagaatagttgactgagttgattgctaaagca 563 |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct: 11288 cctgcagaactcattgggaaattggtaatagaatagttgactgagttgattgctaaagca 11229 Query: 564 ngtactaaagaaaagtgc-attgtctttctttccgatctcttcttttt-acagaaactaa 621 ||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 11228 ggtactaaag-aaagtgcaattgtctttctttccgatctcttctttttaacagaaactaa 11170 Query: 622 attaaagacaattctgtccaagcntattgtcaaa-gataaatttgatagaagcttg-aaa 679 |||||||||||||||||| |||| | ||||||| ||||||| ||||||||||||| ||| Sbjct: 11169 attaaagacaattctgtcaaagcattatgtcaaaggataaatatgatagaagcttgaaaa 11110 Query: 680 actttgacatgcttagaagacc-gtgtttaaacatgttactaat-ctactgaatctacgt 737 |||| ||||||| |||||||| ||||| || ||||||||||| ||||||||||||||| Sbjct: 11109 acttgaacatgctaagaagaccagtgttaaacaatgttactaatactactgaatctacgt 11050 Query: 738 tc 739 || Sbjct: 11049 tc 11048 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7647 Number of Sequences: 1807 Number of extensions: 7647 Number of successful extensions: 52 Number of sequences better than 1.0e-20: 1 length of query: 919 length of database: 10,358,551 effective HSP length: 16 effective length of query: 903 effective length of database: 10,329,639 effective search space: 9327664017 effective search space used: 9327664017 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)