BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZC08RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1386 1223 0.0
>3x_Contig1386
Length = 5452
Score = 1223 bits (617), Expect = 0.0
Identities = 796/845 (94%), Gaps = 9/845 (1%)
Strand = Plus / Minus
Query: 48 tgccttacgacatctgtccttagaaccttcagcaatcttgtttccggaagtgaaactgtc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4512 tgccttacgacatctgtccttagaaccttcagcaatcttgtttccggaagtgaaactgtc 4453
Query: 108 gttagtacaagaaccaccacggataccaacggccaaagcagtggctgcagagaaggtgaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4452 gttagtacaagaaccaccacggataccaacggccaaagcagtggctgcagagaaggtgaa 4393
Query: 168 aacccagttcaagaagtccaaagagactaatatgataggccaagccaaagctgagatgaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4392 aacccagttcaagaagtccaaagagactaatatgataggccaagccaaagctgagatgaa 4333
Query: 228 gttagctatcaaagcatacaacgagtcgaaaacgataccgaaaacagcagcaaagatagc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4332 gttagctatcaaagcatacaacgagtcgaaaacgataccgaaaacagcagcaaagatagc 4273
Query: 288 aaagttaactctggaactagaatggtcctgagtagcaatcaaattaccgactagaccgag 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4272 aaagttaactctggaactagaatggtcctgagtagcaatcaaattaccgactagaccgag 4213
Query: 348 aacaatgattaaaaacacaaagttaacaccacgaagcgaattgtctaagattgaaagcat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4212 aacaatgattaaaaacacaaagttaacaccacgaagcgaattgtctaagattgaaagcat 4153
Query: 408 tttctatttttttttcttatattagagttttggtttaatttcagcttgagagatttcttt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4152 tttctatttttttttcttatattagagttttggtttaatttcagcttgagagatttcttt 4093
Query: 468 taccaactttttatcaagcaagcaatcaaattcgaacttaatttatcttttattgatgta 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4092 taccaactttttatcaagcaagcaatcaaattcgaacttaatttatcttttattgatgta 4033
Query: 528 nagacttaaaccttaattgantacagaagtattattaattaaacantantagtattattt 587
||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct: 4032 aagacttaaaccttaattgataacagaagtattattaattaaacaataatagtattattt 3973
Query: 588 tatatattaagtaaaagagtgaaagaaagaagtaaagttagaaccag-aaaaatttatat 646
||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||
Sbjct: 3972 tatatattaagtaaaagagtgaaggaaagaagtaaagtaagaaccagaaaaaatttataa 3913
Query: 647 tttggttccccttatttattaaaggattggaccattcaatttatgttatcatttcccgga 706
||| ||| ||||||||||||||||||| | ||||| |||| ||||| ||||||| |||||
Sbjct: 3912 ttt-gtttcccttatttattaaaggatagaaccatacaatatatgtaatcattt-ccgga 3855
Query: 707 ttgaaaaatttctttccttaaacttttaccttttttttacctgccctcaaaaaacccggt 766
|||||| ||||| ||||||||||||||||| ||| | ||||||| |||||||||| | ||
Sbjct: 3854 ttgaaatatttc-ttccttaaacttttaccctttatatacctgcactcaaaaaactctgt 3796
Query: 767 gttacttaata-ctttttacagaaaggagccaaaaccattacaatggcaaatgaaaacag 825
| || ||||| | ||| |||||||| || ||||| || |||| ||||| || |||||
Sbjct: 3795 ataac-taataccatttaacagaaagaggcaaaaacaataacaaatgcaaaagacaacag 3737
Query: 826 tttttttcccttct-attaccaagaaaaggttttttttttttggtttttttcccggctta 884
||| ||| ||||| |||||||||||| || |||||||||||| ||||||||| |||||
Sbjct: 3736 -tttcttctcttctcattaccaagaaatgg-tttttttttttgttttttttccgtgctta 3679
Query: 885 tactt 889
|||||
Sbjct: 3678 tactt 3674
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,191
Number of Sequences: 1807
Number of extensions: 16191
Number of successful extensions: 212
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)