BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZC09FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1728 1382 0.0
>3x_Contig1728
Length = 20685
Score = 1382 bits (697), Expect = 0.0
Identities = 807/831 (97%), Gaps = 10/831 (1%)
Strand = Plus / Minus
Query: 95 tagcctttcgttataattatccaatacttttccattttccgctaatgagtcttggaatac 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7679 tagcctttcgttataattatccaatacttttccattttccgctaatgagtcttggaatac 7620
Query: 155 ttgcaaatccttctcatcaatatcatcatcggaaaaattcccttccgcgtccaattcttg 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7619 ttgcaaatccttctcatcaatatcatcatcggaaaaattcccttccgcgtccaattcttg 7560
Query: 215 tctgttcaatacctcttcacccttaagcttggcaacgtacgcttctaaccttctgttaga 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7559 tctgttcaatacctcttcacccttaagcttggcaacgtacgcttctaaccttctgttaga 7500
Query: 275 tctttgtaaatgcttcactgcattattgatctcttttctgatctcttgtaattcatgctc 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7499 tctttgtaaatgcttcactgcattattgatctcttttctgatctcttgtaattcatgctc 7440
Query: 335 agacgattctctaatagcaatcacgaactcttgaatctgaattggtctacgaataccaga 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7439 agacgattctctaatagcaatcacgaactcttgaatctgaattggtctacgaataccaga 7380
Query: 395 agaatgtgccatatttctatgttaagtctatccttagctatgtatgttttttcacttttt 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7379 agaatgtgccatatttctatgttaagtctatccttagctatgtatgttttttcacttttt 7320
Query: 455 agtcttgtttcggttggaaagtacgagatgaattaagatcggtatccttaactatatatt 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7319 agtcttgtttcggttggaaagtacgagatgaattaagatcggtatccttaactatatatt 7260
Query: 515 caagctagccttttataacaataatttaagccagagtttattctcttactatttataccc 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7259 caagctagccttttataacaataatttaagccagagtttattctcttactatttataccc 7200
Query: 575 aacggtaagatatcacgccccacatatgacacccacccctccgaggcaccatcattgcna 634
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 7199 aacggtaagatatcacgccccacatatgacacccacccctccgaggcaccatcattgcaa 7140
Query: 635 atcagagtgtatgatgcgcacgttactatgctgacttttt-cagctccaaagc-acacta 692
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 7139 atcagagtgtatgatgcgcacgttactatgctgactttttccagctccaaagcaacacta 7080
Query: 693 cttgtt-aaaatcacatcagcttttctgcttt-ctttcttctgggctggatttccccg-c 749
|||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||| |
Sbjct: 7079 cttgttaaaaatcacatcagcttttctgctttcctttctcctgggctggatttccccgcc 7020
Query: 750 taagtccttctctggaacttgaac-ttgtccc-ttcagcaaagagttgagaaactcacga 807
||||||||||||||| | ||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 7019 taagtccttctctgggaactgaactttgtccctttcagcaaagagttgagaaactcacga 6960
Query: 808 gggacacaaaatcaacgagatttagggcccg-ttatgtaattcttttcatcccat-aaac 865
|| |||||||| |||||||| |||||| ||| ||||||||||||||||||||||| ||||
Sbjct: 6959 ggaacacaaaaacaacgagaattaggggccgcttatgtaattcttttcatcccataaaac 6900
Query: 866 aaaaaaattgtgctgntttggctt-cacccatccactacgcccaataaggg 915
| ||||||||||||| |||||||| ||||||| |||||||| |||| ||||
Sbjct: 6899 agaaaaattgtgctgttttggcttccacccatacactacgcacaatcaggg 6849
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6762
Number of Sequences: 1807
Number of extensions: 6762
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)