BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZC09RM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1167 553 e-157
3x_Contig985 539 e-153
>3x_Contig1167
Length = 4801
Score = 553 bits (279), Expect = e-157
Identities = 356/378 (94%), Gaps = 3/378 (0%)
Strand = Plus / Plus
Query: 431 acaatgagaactgcaatttcatagactcggaagcattacc-gtgataccattcgaatctc 489
||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||
Sbjct: 150 acaatgagaactgcaatcccacagactcggaagcattacccgtgataccattcgaatctc 209
Query: 490 tgttttaccagtggttcagtcaataaatctgaatcgggactaattttacccaagcatctt 549
||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 210 tgtcttaccagtggttcagtcaataaatcttaatcgggactaattttacccaattatctt 269
Query: 550 ggtcctgttttactccttccatcaagttcgtatagtaagccgtccttttcaatgaatgtt 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ggtcctgttttactccttccatcaagttcgtatagtaagccgtccttttcaatgaatgtt 329
Query: 610 atgaaatgtaactcaacattctcttctgcagaaagagcagcagtatcaccttgctgacta 669
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 330 atgaaatgtaactcaacatcctcttctgcagaaggagcagcagtatcaccttgctgacta 389
Query: 670 ttttcgttatatatcttgcttattgataccnagaagtcatcgactgcatcgtcatcagaa 729
|||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 390 ttttcgttatatatctcgctaattgataccaagaagtcatcgactgcatcgtcatcagaa 449
Query: 730 ttctga-cattacttgcgcggtttttttgtcaaaaattgtttcaagatagatccatcagt 788
| |||| ||| |||||| ||| || | |||||||||||||||||||||||| ||||||||
Sbjct: 450 tactgaccatcacttgc-cgggttctctgtcaaaaattgtttcaagatagaaccatcagt 508
Query: 789 tagcaagtttgctttatt 806
|||||||||||| |||||
Sbjct: 509 tagcaagtttgcattatt 526
Score = 232 bits (117), Expect = 1e-60
Identities = 123/125 (98%)
Strand = Plus / Plus
Query: 290 atctcgtatgattcggctaaataccattcactactacatatgtttatattaatgacgttc 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 atctcgtatgattcggctaaataccattcactactacatatgtttatattaatgacgttc 66
Query: 350 aaaccatggttcacatgaacctcggcagtttattaattgcaaagtcatattgatgctaat 409
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 67 aaaccatggttcacatgaacctcggcagtttattaattgttaagtcatattgatgctaat 126
Query: 410 ctaga 414
|||||
Sbjct: 127 ctaga 131
>3x_Contig985
Length = 5529
Score = 539 bits (272), Expect = e-153
Identities = 491/564 (87%)
Strand = Plus / Plus
Query: 57 cttatgcaagacttccgttgcaattcttggcacctgaacttcatttcaatgatgcaacag 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4965 cttatgcaagacttccgttgcaattcttggcacctgaacttcatttcaatgatgcaacag 5024
Query: 117 aagccttcgaatttctaacggaacttgagctaatccagtttatggttgtgccggaaagcg 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5025 aagccttcgaatttctaacggaacttgagctaatccagtttatggttgtgccggaaagcg 5084
Query: 177 accccaacgagatctatctcgattgtaaaagctgccgttctacaatcattaaacatttcg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5085 accccaacgagatctatctcgattgtaaaagctgccgttctacaatcattaaacatttcg 5144
Query: 237 gcgatgctagaagaattgacatcaagggacaaatttaagttgtttcgaagaatatctcgt 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5145 gcgatgctagaagaattgacatcaagggacaaatttaagttgtttcgaagaatatctcgt 5204
Query: 297 atgattcggctaaataccattcactactacatatgtttatattaatgacgttcaaaccat 356
|||||| ||||||||| ||| | || || |||||||||||||||||| ||| ||| ||
Sbjct: 5205 atgattaggctaaataaaattaaataataaatatgtttatattaatgaagttaaaaaaat 5264
Query: 357 ggttcacatgaacctcggcagtttattaattgcaaagtcatattgatgctaatctagaga 416
|||| | ||| | || || |||||||||||| ||||| |||||||| |||| |||||
Sbjct: 5265 ggttaaaatgcaactaggacgtttattaattgaaaagtactattgatgataataaagaga 5324
Query: 417 tggccctagccctaacaatgagaactgcaatttcatagactcggaagcattaccgtgata 476
||| ||| || |||| ||| || ||||| ||||| | ||||| |||| ||||||
Sbjct: 5325 tggaaatagaaaaaaaaatgcgaaatgaaatttaatagaataggaagaattaaagtgata 5384
Query: 477 ccattcgaatctctgttttaccagtggttcagtcaataaatctgaatcgggactaatttt 536
||| |||| | ||||||| ||||||| ||| ||||||| ||||| |||| |||||||
Sbjct: 5385 aaattagaatatatgttttaaaagtggttaagtaaataaatatgaatagggaataatttt 5444
Query: 537 acccaagcatcttggtcctgttttactccttccatcaagttcgtatagtaagccgtcctt 596
| ||| || ||||| ||||||| | || || ||||| |||||||||| || ||
Sbjct: 5445 aaaaaagaatattggtaatgttttaataattaaataaagttagtatagtaagaagtaatt 5504
Query: 597 ttcaatgaatgttatgaaatgtaa 620
|| ||||||||||||||| |||||
Sbjct: 5505 ttaaatgaatgttatgaactgtaa 5528
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6933
Number of Sequences: 1807
Number of extensions: 6933
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 2
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)