BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC33ZC10FM1.SCF screened BAC_end
         (917 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1657                                                        1209   0.0  

>3x_Contig1657 
          Length = 14558

 Score = 1209 bits (610), Expect = 0.0
 Identities = 638/646 (98%), Gaps = 1/646 (0%)
 Strand = Plus / Plus

                                                                        
Query: 87   agtgaacgggataaaaactgagggagatgctattaggttacttgatgtggattttaacat 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5541 agtgaacgggataaaaactgagggagatgctattaggttacttgatgtggattttaacat 5600

                                                                        
Query: 147  gagcgttgaggtaaatgaatgccagcctagttccacagttaccgttgatttataatcatg 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5601 gagcgttgaggtaaatgaatgccagcctagttccacagttaccgttgatttataatcatg 5660

                                                                        
Query: 207  gagtctgtgaaacatacatacattatttttgtttagtatataaggaacgcatcacttctg 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5661 gagtctgtgaaacatacatacattatttttgtttagtatataaggaacgcatcacttctg 5720

                                                                        
Query: 267  gaccctctcttgttctgcaatataaaccttgcatatagactcgttataggcaaggcaagt 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5721 gaccctctcttgttctgcaatataaaccttgcatatagactcgttataggcaaggcaagt 5780

                                                                        
Query: 327  aaacatatataggttgctcggaatcgtactcgtaaaaagactagttcgaaacaatggcta 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5781 aaacatatataggttgctcggaatcgtactcgtaaaaagactagttcgaaacaatggcta 5840

                                                                        
Query: 387  caggtatttccaagactttgaaatataacgcacaaacggataagttaatcacttttgcag 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5841 caggtatttccaagactttgaaatataacgcacaaacggataagttaatcacttttgcag 5900

                                                                        
Query: 447  ctggctgcttctggggtactcaacacatctttttgaagcatttcggggacaagatcattg 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5901 ctggctgcttctggggtactcaacacatctttttgaagcatttcggggacaagatcattg 5960

                                                                        
Query: 507  atggcaaagttggatattctaatggatccgaaagtctgaaagacaaaccagatacagttt 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5961 atggcaaagttggatattctaatggatccgaaagtctgaaagacaaaccagatacagttt 6020

                                                                        
Query: 567  cttacgaacgtgtcaagaagggtgataccggcttcgctgaagtttatcaaatctcataca 626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6021 cttacgaacgtgtcaagaagggtgataccggcttcgctgaagtttatcaaatctcataca 6080

                                                                        
Query: 627  atccttagctggtatcttttgaaggagcttgtagacttcttttttcgtattcatgatcct 686
            ||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 6081 atcctaagctggtatc-tttgaaggagcttgtagacttctttttccgtattcatgatcct 6139

                                                          
Query: 687  actaccggaaatgctcaaggccctgatcaaggtattcaattccgta 732
            ||||| | ||||||||| |||||||||||||||| ||||| |||||
Sbjct: 6140 actacggtaaatgctcagggccctgatcaaggtagtcaataccgta 6185


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6740
Number of Sequences: 1807
Number of extensions: 6740
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)