BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZC10RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1803 961 0.0
>3x_Contig1803
Length = 52241
Score = 961 bits (485), Expect = 0.0
Identities = 500/505 (99%)
Strand = Plus / Minus
Query: 48 cttgtccgtcacatgccatatcaagatctgtgagtccttctaactgaagcattcttttta 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttgtccgtcacatgccatatcaagatctgtgagtccttctaactgaagcattcttttta 446
Query: 108 taacttcctgattgacattattatcttcagcaaccaaaactctatgccgagtaacttcac 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taacttcctgattgacattattatcttcagcaaccaaaactctatgccgagtaacttcac 386
Query: 168 ttgctacagatgatatactcctagtactggtcgccgtacccgtactttgtaaaaatggtc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgctacagatgatatactcctagtactggtcgccgtacccgtactttgtaaaaatggtc 326
Query: 228 tatcaacacgaacattcccaacgctattttcagtagaattactggcttttctctcactga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatcaacacgaacattcccaacgctattttcagtagaattactggcttttctctcactga 266
Query: 288 cattgttatcgctatgtccgtcgatactagatttagatttctttgtttgaacagatttcc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cattgttatcgctatgtccgtcgatactagatttagatttctttgtttgaacagatttcc 206
Query: 348 tagaggaattgattttaaatttaacctttctgttcttcctgctgtgaatattgaactcat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tagaggaattgattttaaatttaacctttctgttcttcctgctgtgaatattgaactcat 146
Query: 408 cttcaaactgtttttcagcaccatcgaatactatctcttttggttgctgtagtggcacag 467
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 145 cttcaaactgtttttcagcaccatcgaatactatctcttttgtttgctgtagtggcacag 86
Query: 468 tgaaaataaatttactttcaacaccaactttcgaattcaacttcattgtacctttcatca 527
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 85 tgaaaataaatttacttccaacaccaactttcgaatccaacttcattgtacctttcatca 26
Query: 528 tctttgcccactggctacaaatgga 552
|||||||| |||| |||||||||||
Sbjct: 25 tctttgccaactgcctacaaatgga 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,830
Number of Sequences: 1807
Number of extensions: 15830
Number of successful extensions: 117
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)