BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZC11FM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1122 858 0.0
>3x_Contig1122
Length = 4483
Score = 858 bits (433), Expect = 0.0
Identities = 592/635 (93%), Gaps = 8/635 (1%)
Strand = Plus / Plus
Query: 246 cagtatcttactatgagcagcttccttgattcttttcgcgatttctctcggaggtaaaaa 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 cagtatcttactatgagcagcttccttgattcttttcgcgatttctctcggaggtaaaaa 76
Query: 306 gtttggatggtcccagccatattctttatagttcaagcctccactacagacatcaataac 365
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 77 gtttggatggtcccagccatattctttagagttcaagcctccactacagacatcaataac 136
Query: 366 atctaccccatgctgtactaaaaatggtaataaccgaatggtgtcattgagtttccaccc 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 atctaccccatgctgtactaaaaatggtaataaccgaatggtgtcattgagtttccaccc 196
Query: 426 gtctgggtcttcaacgttttcatctgcacaaagtctcaagaaaattggcatagagtcagg 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gtctgggtcttcaacgttttcatctgcacaaagtctcaagaaaattggcatagagtcagg 256
Query: 486 aatcgacgacctcacctcatctattacctctagtagaaatttgattctattttcaaaagg 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aatcgacgacctcacctcatctattacctctagtagaaatttgattctattttcaaaagg 316
Query: 546 gccaccatacctatcattcctcttattcgctgtggctgtgtaaaatttgac-aggtaaat 604
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 317 gccaccatacctatcattcctcttattcgctgtggctgtgtaaaa-ttgacaaggtaaat 375
Query: 605 atccatatccagcatgaattttcacataatcgtaccctgctttctcgacagcgagcttgg 664
||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 376 atccataaccagcatgaatttcaacaaaatcgtaccctgctttctcgacagcgagcttgg 435
Query: 665 cactaataccgnattgntttatagttttctcaa-ttgagcaagcgctagttcatttgg-a 722
||||||||||| |||| |||||||||||||||| ||||||||||| ||||||||||| |
Sbjct: 436 cactaataccgtattgttttatagttttctcaatttgagcaagcgtcagttcatttggaa 495
Query: 723 ttac-cccgaatcatcgaaggttcctgttgagggagccattatttttttaggcc-tccac 780
|||| || ||||||||||||| | |||| |||||||||| || ||| | | ||| |||||
Sbjct: 496 ttacaccagaatcatcgaagggtactgtagagggagccactaatttatcaagccatccac 555
Query: 781 ctt-ctttttggggacctaaacccctatttccccttttaaaggaaatgccaaacttgcct 839
||| || || ||||| ||||| |||| ||| || |||| |||| |||||| |||||| |
Sbjct: 556 cttcctcatttgggacgtaaacgcctagttcgccatttagaggagatgccagacttgctt 615
Query: 840 ttcggccaccttga-ccaatttgacacccatttta 873
| |||||| | ||| |||||| |||||| ||||||
Sbjct: 616 tacggccagcatgacccaattggacaccaatttta 650
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5650
Number of Sequences: 1807
Number of extensions: 5650
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)