BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZC11RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1281 1364 0.0
>3x_Contig1281
Length = 7825
Score = 1364 bits (688), Expect = 0.0
Identities = 753/771 (97%), Gaps = 3/771 (0%)
Strand = Plus / Minus
Query: 47 acatattgtgaagaatgactggttgcagattttgggagagatgccaatagctgcaacata 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1466 acatattgtgaagaatgactggttgcagattttgggagagatgccaatagctgcaacata 1407
Query: 107 ttttcgctcaaaatcttacttatcacagcttgaacatctgcctcccatgattggtcgaga 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1406 ttttcgctcaaaatcttacttatcacagcttgaacatctgcctcccatgattggtcgaga 1347
Query: 167 gataataaaaactccaagtattccgtgaacaatagcatacccgcatggaccactggccaa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1346 gataataaaaactccaagtattccgtgaacaatagcatacccgcatggaccactggccaa 1287
Query: 227 ttcttttgttcataactctctctcaaatattttgtaaagagaatgtaacactcatctaac 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1286 ttcttttgttcataactctctctcaaatattttgtaaagagaatgtaacactcatctaac 1227
Query: 287 aatgcgcctgagacataatccggtgtagcatcaatttcataaatgcaccgtgatctctgg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1226 aatgcgcctgagacataatccggtgtagcatcaatttcataaatgcaccgtgatctctgg 1167
Query: 347 aatttcacaaaccacgaaatgaataacatgtattcaatcttatgcaatggtaattgatct 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1166 aatttcacaaaccacgaaatgaataacatgtattcaatcttatgcaatggtaattgatct 1107
Query: 407 tgaatttcactcgtaaaactatctgtggcattttgcaataacaaattgaaactggaatca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1106 tgaatttcactcgtaaaactatctgtggcattttgcaataacaaattgaaactggaatca 1047
Query: 467 acaaaatctgccaaaaactcttttatgctagtaatgttgtcagaagacatgtaaatagaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046 acaaaatctgccaaaaactcttttatgctagtaatgttgtcagaagacatgtaaatagaa 987
Query: 527 ttaccttcagtactaaaaaagctgctactgagtccttcaat-acatcgagtctcatagtg 585
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 986 ttaccttcagtactaaaaaagctgctactgagtccttcaataacatcgagtctcatagtg 927
Query: 586 atggttttattccatttttttcttgagtctaactcttgtaatgccgcatcatcacgcatg 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 atggttttattccatttttttcttgagtctaactcttgtaatgccgcatcatcacgcatg 867
Query: 646 ttgacagaattactagcaattgtcaatcgcgttttttgaagtgtctgtttagacaataaa 705
|||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||
Sbjct: 866 ttgacagaattactagcaattgtcaatcgcgtattttgaggtgtctgtatagacaataaa 807
Query: 706 ccggcccattttanaatgacgagaaggaagttttctttattacattaaactccttttcat 765
|| ||| | | || ||||||||||| ||||| |||||||||||||||| || ||||||||
Sbjct: 806 cc-gccaaatctagaatgacgagaa-gaagtattctttattacattaagcttcttttcat 749
Query: 766 gttcctttgcaagtatttttgaaaggggttaacctgaccttgtcatgttgg 816
||||||||||||||| || ||||||| ||| ||||||| ||||||||||||
Sbjct: 748 gttcctttgcaagtaattctgaaaggtgtttacctgacgttgtcatgttgg 698
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7715
Number of Sequences: 1807
Number of extensions: 7715
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)