BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZD01RM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1613 1400 0.0
>3x_Contig1613
Length = 13977
Score = 1400 bits (706), Expect = 0.0
Identities = 772/786 (98%), Gaps = 6/786 (0%)
Strand = Plus / Minus
Query: 48 tacaaaggatcggtaggcacgctgatgctgagtctgtgaggcagactttgttgacgactg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3036 tacaaaggatcggtaggcacgctgatgctgagtctgtgaggcagactttgttgacgactg 2977
Query: 108 ctccagctggaagtattcctcctgccgtggcttcatctggtgcttcttccgctgcatcgg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2976 ctccagctggaagtattcctcctgccgtggcttcatctggtgcttcttccgctgcatcgg 2917
Query: 168 ctaacggtgctgctgcccaagttactggaggtgtttcatctggttattctggcatctata 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2916 ctaacggtgctgctgcccaagttactggaggtgtttcatctggttattctggcatctata 2857
Query: 228 atccgtacatgggatccaaaaaggaacctctacatgttgttgtcactgaatccacattct 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2856 atccgtacatgggatccaaaaaggaacctctacatgttgttgtcactgaatccacattct 2797
Query: 288 ctattgtttccagatggttaaaatggttgatcgtatttggtgcagttacatacggtttga 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2796 ctattgtttccagatggttaaaatggttgatcgtatttggtgcagttacatacggtttga 2737
Query: 348 ctgaaggtttcaaatacattacagaacattcaaccctcttcaagacaaatgaagtcgccg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2736 ctgaaggtttcaaatacattacagaacattcaaccctcttcaagacaaatgaagtcgccg 2677
Query: 408 ataaatctgtggatgttgcaaagactaatgtaagatttgatgacgtgcggggttgtgacg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2676 ataaatctgtggatgttgcaaagactaatgtaagatttgatgacgtgcggggttgtgacg 2617
Query: 468 aagctagagctgaattggaggaaattgtcgatttcttaaaagatcctaccaaatacgaat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2616 aagctagagctgaattggaggaaattgtcgatttcttaaaagatcctaccaaatacgaat 2557
Query: 528 ccttgggtggtaagttacctaaaggtgttctattgaccggacctccaggtactggtaaga 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2556 ccttgggtggtaagttacctaaaggtgttctattgaccggacctccaggtactggtaaga 2497
Query: 588 ctttattggcaagagccaccgccggtgaagctggtgttgactttttcttcatgtcagggt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2496 ctttattggcaagagccaccgccggtgaagctggtgttgactttttcttcatgtcagggt 2437
Query: 648 cagagtttgacgaaatttatgtatgttgttggtgccaagcgtatcagagagttgtttgca 707
|||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 2436 cagagtttgacgaagtttatgta-ggtgttggtgccaagcgtatcagagagttgtttgca 2378
Query: 708 caggccccgcgctcgtgcccctgctattatctttatcgatgaatttggatgctattggga 767
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 2377 cagg-cccgcgctcgtgcccctgctattatctttatcgatgaa-ttggatgctatt-gga 2321
Query: 768 gttaagcggtattccaaagattaagcctaacgcaaaacaaactttgaatcaattgtttgg 827
| |||||| || |||||||| ||| || |||||||||||||||||||||||||| ||||
Sbjct: 2320 ggtaagcgtaatcccaaagatcaag-cttacgcaaaacaaactttgaatcaattg-ttgg 2263
Query: 828 ttgaat 833
||||||
Sbjct: 2262 ttgaat 2257
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7423
Number of Sequences: 1807
Number of extensions: 7423
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)