BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZD02FM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1474 1542 0.0
>3x_Contig1474
Length = 10584
Score = 1542 bits (778), Expect = 0.0
Identities = 791/794 (99%), Gaps = 1/794 (0%)
Strand = Plus / Plus
Query: 84 cggaggtacaaacaagtcacgtgataaataggtgtggttcataataatatatgtatatgc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6102 cggaggtacaaacaagtcacgtgataaataggtgtggttcataataatatatgtatatgc 6161
Query: 144 ataagatgcgctatccgaataaaatagtagtatatatttacaagaggatgacggggaggt 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6162 ataagatgcgctatccgaataaaatagtagtatatatttacaagaggatgacggggaggt 6221
Query: 204 attcgacgtatttattgtcaacggtgaacagccgttctcattcctggtcctttttcttgg 263
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6222 attcgacgtatctattgtcaacggtgaacagccgttctcattcctggtcctttttcttgg 6281
Query: 264 cttgttctctagcaagtttttgctccgctagtacctgatccaactcttcccttatttgta 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6282 cttgttctctagcaagtttttgctccgctagtacctgatccaactcttcccttatttgta 6341
Query: 324 acatactctttggcaaaacaggattaccatcttcatcatactttggaatttcgacatcgg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6342 acatactctttggcaaaacaggattaccatcttcatcatactttggaatttcgacatcgg 6401
Query: 384 ttctcaaacccccatccttcttcaactgatcgattacgataggttcgaaaaaccgtgtac 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6402 ttctcaaacccccatccttcttcaactgatcgattacgataggttcgaaaaaccgtgtac 6461
Query: 444 cggtgtatacaccgattgcgcaaatgaccgaaaatatcaccacatccatacctctaattc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6462 cggtgtatacaccgattgcgcaaatgaccgaaaatatcaccacatccatacctctaattc 6521
Query: 504 tgcccaccatgttcgttactttccttacagctcacctatttacctccttcctcaatatat 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6522 tgcccaccatgttcgttactttccttacagctcacctatttacctccttcctcaatatat 6581
Query: 564 tatttaatcactcgctcaaaagaaagggggtctcgaaataaataatcagcagttgcaagt 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6582 tatttaatcactcgctcaaaagaaagggggtctcgaaataaataatcagcagttgcaagt 6641
Query: 624 gtcaccaatttgtcctgtaacctggcttaactttcaagatacttgatgtcctttaaaaaa 683
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 6642 gtcaccaatttgtcctgtaacctggcttaactttcaagaaacttgatgtcctttaaaaaa 6701
Query: 684 tacaacttagtattttgatcgaaaaagaaagagaaaaagaaatattggcgagtaaaagac 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6702 tacaacttagtattttgatcgaaaaagaaagagaaaaagaaatattggcgagtaaaagac 6761
Query: 744 ataaattcttccgtagaagtgaatcaccaggtcaagctggtgtgggataaactagttctc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6762 ataaattcttccgtagaagtgaatcaccaggtcaagctggtgtgggataaactagttctc 6821
Query: 804 ggggcatagcggatgcctatccaacccaaaaacacctacttctctgtttcttggtttcta 863
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 6822 ggggcatagcggatgcctatccaacccaaaaacacctacttctctgtttctt-gtttcta 6880
Query: 864 gttacttctgcttt 877
||||||||||||||
Sbjct: 6881 gttacttctgcttt 6894
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7048
Number of Sequences: 1807
Number of extensions: 7048
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)