BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZD02RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1788 1518 0.0
>3x_Contig1788
Length = 28493
Score = 1518 bits (766), Expect = 0.0
Identities = 853/873 (97%), Gaps = 7/873 (0%)
Strand = Plus / Minus
Query: 47 ccgaactgactgcaagtggagatgcaaatcctgtcatctattgtggtaattctaaatctc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5231 ccgaactgactgcaagtggagatgcaaatcctgtcatctattgtggtaattctaaatctc 5172
Query: 107 caccgagtttgataaccttctgataatagatgtagaagaaatcagagtacactaaagttt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5171 caccgagtttgataaccttctgataatagatgtagaagaaatcagagtacactaaagttt 5112
Query: 167 gaatcacaccggtgaaaactgataatttatcgaatctttcttcggtataatacctccata 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5111 gaatcacaccggtgaaaactgataatttatcgaatctttcttcggtataatacctccata 5052
Query: 227 tccaatttggaatgtacaaggcacggtataaccccaatgcaaaaatataatgagatgtca 286
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5051 tccaaattggaatgtacaaggcacggtataaccccaatgcaaaaatataatgagatgtca 4992
Query: 287 attgttttgctttacctgttttagtcaacataaacaattgaggaaggattgcaacacttt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4991 attgttttgctttacctgttttagtcaacataaacaattgaggaaggattgcaacacttt 4932
Query: 347 ccaaccatagagagaaggaccagcatatttgtataaaactgaaacgataattgaaaatta 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4931 ccaaccatagagagaaggaccagcatatttgtataaaactgaaacgataattgaaaatta 4872
Query: 407 atcctaggagaatgcatggtactattaaaaacttgattttaaattgatctctggtgatca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4871 atcctaggagaatgcatggtactattaaaaacttgattttaaattgatctctggtgatca 4812
Query: 467 tgtcttgatatgcgacagggtttttaaatttttgttggcgcattaacacaatgacgtaaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4811 tgtcttgatatgcgacagggtttttaaatttttgttggcgcattaacacaatgacgtaaa 4752
Query: 527 ccgaagatgaaatgaaaacaattttcattaagaagttgtacaaggaggtccatttggtaa 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4751 ccgaagatgaaatgaaaacaattttcattaagaagttgtacaaggaggtccatttggtaa 4692
Query: 587 ataggttcaaataacgtgtgataaagaccaaggtgtatagcagttgagttttcaatgaga 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4691 ataggttcaaataacgtgtgataaagaccaaggtgtatagcagttgagttttcaatgaga 4632
Query: 647 taccatcaactgagttagatgtttgtgatcgattgtatcaaaatgatgatactagccaaa 706
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 4631 taccatcaactgagttagatg-ttgtgatcgattgtatcaaaatgatgatactagccaaa 4573
Query: 707 tgagagatatcacctatacactcgattacaaaatagttgggtataacaatggtagtaaag 766
||||||| |||||||| ||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 4572 tgagagaaatcacctaaacactcgattacaaaatagttggtaataacaatgttagtaaag 4513
Query: 767 atgctgccagtagagataagccgatggaaatcatcatttcag-accaagatataacgttt 825
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct: 4512 atgctgccagtagagataagccgatggaaatcatca-ttcagaaccaagatataacg-tt 4455
Query: 826 ccgatcgaaggttgacgtncaacaatgatataaaattaggttctttttacatacctgcta 885
||||||| |||||||||| ||||||||||||||||| | |||||||| ||||||||||||
Sbjct: 4454 ccgatcg-aggttgacgtccaacaatgatataaaatca-gttcttttcacatacctgcta 4397
Query: 886 ttcttgaaaacggtcaccattatgtggcacact 918
||| |||||||| ||| ||| ||||| ||||||
Sbjct: 4396 ttc-tgaaaacgttcaacataatgtgacacact 4365
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7294
Number of Sequences: 1807
Number of extensions: 7294
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)