BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZD03FM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1426 1487 0.0
>3x_Contig1426
Length = 8319
Score = 1487 bits (750), Expect = 0.0
Identities = 850/870 (97%), Gaps = 10/870 (1%)
Strand = Plus / Plus
Query: 87 ccagcagatgtatatttgccagcaaattcatggatgattccttttttaaaaagtactccg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5947 ccagcagatgtatatttgccagcaaattcatggatgattccttttttaaaaagtactccg 6006
Query: 147 gatttgatcgcttctgagagaatccatcttagagacatatcacttaaaaaatgatttttc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6007 gatttgatcgcttctgagagaatccatcttagagacatatcacttaaaaaatgatttttc 6066
Query: 207 tcagtgatatccggtggccaactcccaccaatatctgagtgatcgcctggaaaccacttc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6067 tcagtgatatccggtggccaactcccaccaatatctgagtgatcgcctggaaaccacttc 6126
Query: 267 tctattagatccgatgatgtccttttactatcaaaagtaccatggggagagtccacctcg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6127 tctattagatccgatgatgtccttttactatcaaaagtaccatggggagagtccacctcg 6186
Query: 327 aatataccttcaactctctggttcacgaaattatctgttctttgggaatgttccagctct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6187 aatataccttcaactctctggttcacgaaattatctgttctttgggaatgttccagctct 6246
Query: 387 aggaaattgttgattcgggatattagttcttgtacggacttactagattgtgattgtgat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6247 aggaaattgttgattcgggatattagttcttgtacggacttactagattgtgattgtgat 6306
Query: 447 gaattaggtcttgagccaatggtatgatttataaattggttactggtactgtgatagttt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6307 gaattaggtcttgagccaatggtatgatttataaattggttactggtactgtgatagttt 6366
Query: 507 gttttcggggcaacattctcatattctatgacataatttctatagttcaacgaaaataaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6367 gttttcggggcaacattctcatattctatgacataatttctatagttcaacgaaaataaa 6426
Query: 567 tttggtctataaggattaggggaaaacgactgttgtttgaacttccctcttctttcgtca 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6427 tttggtctataaggattaggggaaaacgactgttgtttgaacttccctcttctttcgtca 6486
Query: 627 atgctaaccgcatgtctgatgtgacgaacgatgccgctcctagctgtatagggaaagagc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6487 atgctaaccgcatgtctgatgtgacgaacgatgccgctcctagctgtatagggaaagagc 6546
Query: 687 cgatctataagtataccacaagaattcaccgaatcaaagaggccttgaaaatgtatttcg 746
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6547 cgatctaaaagtataccacaagaattcaccgaatcaaagaggccttgaaaatgtatttcg 6606
Query: 747 atctcaatatttcttgaaaacgttttcttaaattcatccaccaaagtagtcgcataactt 806
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6607 atctcaatatttcttgaaaacgttttcttaaattcatccaccaaagtagtcgcataactc 6666
Query: 807 ctttgtacaggctgtgcagcgta-tcccaggctt-atatattttcc-agccatcc-tatc 862
|||||| |||||||||||||| |||||||||| ||||||||||| |||||||| ||||
Sbjct: 6667 ggttgtacgggctgtgcagcgtattcccaggcttcatatattttccaagccatccatatc 6726
Query: 863 attt-atctattcc-acgttta-tagttcaa-cattttcagca-tccagctagtaccctt 917
|||| ||||| ||| ||||||| ||| ||| ||||| ||||| ||||||||||||||||
Sbjct: 6727 atttcatctagtccaacgtttagaagtccaaccatttccagcattccagctagtaccctt 6786
Query: 918 gctatgaacgca-ctctgctggacccgaac 946
|||||||||||| |||||||| ||||||||
Sbjct: 6787 gctatgaacgcacctctgctgaacccgaac 6816
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6041
Number of Sequences: 1807
Number of extensions: 6041
Number of successful extensions: 26
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)