BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZD03RM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1009 1463 0.0
>3x_Contig1009
Length = 4650
Score = 1463 bits (738), Expect = 0.0
Identities = 882/912 (96%), Gaps = 14/912 (1%)
Strand = Plus / Minus
Query: 49 tctcttgaatatcgtactggcaatcatctcgtaataggtgtatatgtatatagtttgagt 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1600 tctcttgaatatcgtactggcaatcatctcgtaataggtgtatatgtatatagtttgagt 1541
Query: 109 tttatgtttgtgtttaacctcgtgacaatacacatacatatatttaaatcctaatataaa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1540 tttatgtttgtgtttaacctcgtgacaatacacatacatatatttaaatcctaatataaa 1481
Query: 169 atatactctatcacaagaaccgaatcttcaactattcacatttcatacttcttatatata 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1480 atatactctatcacaagaaccgaatcttcaactattcacatttcatacttcttatatata 1421
Query: 229 aaactagaaccgaaaaccatcttagtgtaacgatactaacactctgtgtgcatattaatc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1420 aaactagaaccgaaaaccatcttagtgtaacgatactaacactctgtgtgcatattaatc 1361
Query: 289 tcgggctaaacgaagcataaaaaagtcaaaccaaaaacagttaaaatgctaaagataacg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1360 tcgggctaaacgaagcataaaaaagtcaaaccaaaaacagttaaaatgctaaagataacg 1301
Query: 349 aggtaactgtcagaaagtcagtctgagacagctgttctaacctgatttccagttttaagg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1300 aggtaactgtcagaaagtcagtctgagacagctgttctaacctgatttccagttttaagg 1241
Query: 409 tacattacagtacaatgcagatactcagctaggcgaattttttttattttgagaattttt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1240 tacattacagtacaatgcagatactcagctaggcgaattttttttattttgagaattttt 1181
Query: 469 tgttggctttttcttttgcatcttagaaacgtgtgtaggactgagagttttgtgcgaaat 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1180 tgttggctttttcttttgcatcttagaaacgtgtgtaggactgagagttttgtgcgaaat 1121
Query: 529 cttgagtgtgtggactgagaaacggtgaaataaatgtggtctgactaagtgtcattgtga 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1120 cttgagtgtgtggactgagaaacggtgaaataaatgtggtctgactaagtgtcattgtga 1061
Query: 589 acgacgccgacacatatggctgtgcc-ggggcctgtacccttttccacacagtagtaata 647
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1060 acgacgccgacacatagggctgtgccgggggcctgtacccttttccacacagtagtaata 1001
Query: 648 ataataaacattagcttcggtgatgtttaacggcatanactgtaaactattggtatgccg 707
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1000 ataataaacattagcttcggtgatgtttaacggcataaactgtaaactattggtatgccg 941
Query: 708 gtccgtatgtagtgcatttttgcaacacgtatactgggaagggagctaaattga-ttttt 766
||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||
Sbjct: 940 gtccgtatgtagtgcatttttgcaacacgtaaactgggaa-ggagctaaattgatttttt 882
Query: 767 aaattganttctc-aatttaagggtggcgtttacgcgtttggttacgttttttgacg-tt 824
||||||| ||||| |||||||||||| ||||||||||||| ||||||||||||||| ||
Sbjct: 881 aaattgatttctcaaatttaagggtgcggtttacgcgtttgtttacgttttttgacgttt 822
Query: 825 acgtacggtac-acgcgt-aaatgt-aacaa-ttatgggggcgggggagggtattaa-ta 879
||||||||||| |||||| |||||| ||||| ||||||||| ||||||| || || ||
Sbjct: 821 acgtacggtacaacgcgtaaaatgtaaacaatttatggggggcggggaggtaataaatta 762
Query: 880 cacctggtttacgcgttg-gatgacttacct-tcggtta-caagggctatccttga-ggc 935
|||||||||||||||||| |||||| ||||| ||| ||| |||||||||||| ||| |||
Sbjct: 761 cacctggtttacgcgttgcgatgacatacctctcgtttaccaagggctatccctgagggc 702
Query: 936 agggccggcggt 947
|||| |||||||
Sbjct: 701 aggggcggcggt 690
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6900
Number of Sequences: 1807
Number of extensions: 6900
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)