BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZD05RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1779 1626 0.0
>3x_Contig1779
Length = 24855
Score = 1626 bits (820), Expect = 0.0
Identities = 861/871 (98%), Gaps = 3/871 (0%)
Strand = Plus / Plus
Query: 47 catgatgtgataatcgctacaaacctggagcatgtacctattctgatattaggtaacaaa 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8695 catgatgtgataatcgctacaaacctggagcatgtacctattctgatattaggtaacaaa 8754
Query: 107 gtggacctaatcccgaagtttcatagagatttatacgttgccaagtcggatgtttcagat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8755 gtggacctaatcccgaagtttcatagagatttatacgttgccaagtcggatgtttcagat 8814
Query: 167 caacggagttcagtagaaaactctgcgaggaaacagacatggaattacgtctctcccttg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8815 caacggagttcagtagaaaactctgcgaggaaacagacatggaattacgtctctcccttg 8874
Query: 227 ttacacaattatgaatacgaagatataccgaagtatgatttaaatccagaaaatcaacac 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8875 ttacacaattatgaatacgaagatataccgaagtatgatttaaatccagaaaatcaacac 8934
Query: 287 gtattaagcaaggtagaggttctctcgaaagaattgggcatagacttgaagcacggattg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8935 gtattaagcaaggtagaggttctctcgaaagaattgggcatagacttgaagcacggattg 8994
Query: 347 cttcatttaccacatgactcgaaagtcaaattaaacagagacatcgccctattctcagta 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8995 cttcatttaccacatgactcgaaagtcaaattaaacagagacatcgccctattctcagta 9054
Query: 407 agttgcaaagacggaactttgatagacaccgtcatcgattggatcctagaattatagttg 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9055 agttgcaaagacggaactttgatagacaccgtcatcgattggatcctagaattatagttg 9114
Query: 467 tgccttgatatttaaaaagaaacctcgattcgaatatataattaagtatgaactgtcact 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9115 tgccttgatatttaaaaagaaacctcgattcgaatatataattaagtatgaactgtcact 9174
Query: 527 caaaggtatcatattatcctgctttttctattctatgttactaactttcaactttgcagc 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9175 caaaggtatcatattatcctgctttttctattctatgttactaactttcaactttgcagc 9234
Query: 587 attttctccgatcttgtcattatgaaatttaaagaaaaagttgattattgaaagtattat 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9235 attttctccgatcttgtcattatgaaatttaaagaaaaagttgattattgaaagtattat 9294
Query: 647 tataccaagacatattattcagaatgcaactgataagggttcaaaaggtgaagaaactac 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9295 tataccaagacatattattcagaatgcaactgataagggttcaaaaggtgaagaaactac 9354
Query: 707 tgggtaacaattgcgcttgaactgcaaagatacgcttaattcagaaagttaaagttttcc 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9355 tgggtaacaattgcgcttgaactgcaaagatacgcttaattcagaaagttaaagttttcc 9414
Query: 767 cttcgataattttacgtaaccggagagttctgttaattggttattcaacgaaattcagta 826
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 9415 cttcgataattttacgtaaccggagagttctgttaattggttattcaacgaattcaagta 9474
Query: 827 tttttattatggaagcataagccnaagagtccgatgctgga-aaaacagatcctttcta- 884
||||||||| ||||||| ||||| | ||||||||||||||| |||||||||||||||||
Sbjct: 9475 tttttattagggaagcaaaagccaaggagtccgatgctggagaaaacagatcctttctat 9534
Query: 885 tat-agagggtgaagttctgtctgtgtgatc 914
||| |||||||||||||||||||||||||||
Sbjct: 9535 tataagagggtgaagttctgtctgtgtgatc 9565
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6637
Number of Sequences: 1807
Number of extensions: 6637
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)