BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZD06FM1.SCF screened BAC_end
(987 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1767 1179 0.0
>3x_Contig1767
Length = 23302
Score = 1179 bits (595), Expect = 0.0
Identities = 707/736 (96%), Gaps = 9/736 (1%)
Strand = Plus / Minus
Query: 93 ccaatctttgtagttctcagactttttttctagaaggcaattttccaactttatatctcc 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21379 ccaatctttgtagttctcagactttttttctagaaggcaattttccaactttatatctcc 21320
Query: 153 atgtgcaatgaatttagaatgcatatattgtacagcatcaattaattgtaacgctaaggc 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21319 atgtgcaatgaatttagaatgcatatattgtacagcatcaattaattgtaacgctaaggc 21260
Query: 213 ggatgtagcttgacacctttctcttaaactaatctttgaattaccacattcgccccaaga 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21259 ggatgtagcttgacacctttctcttaaactaatctttgaattaccacattcgccccaaga 21200
Query: 273 aacaactaaatcgtataaggttccatgatcgatcttatctgttaaacaatatgccaccag 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21199 aacaactaaatcgtataaggttccatgatcgatcttatctgttaaacaatatgccaccag 21140
Query: 333 atcatcgtctaatttccattttgttaaaggaagaatattattgtgggaaagtttcgacca 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21139 atcatcgtctaatttccattttgttaaaggaagaatattattgtgggaaagtttcgacca 21080
Query: 393 tattgatatttcacgtactacttgcctctttacacttcgattgtccttgaacttgataat 452
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21079 tattgagatttcacgtagtacttgcctctttacacttcgattgtccttgaacttgataat 21020
Query: 453 cttcatcgccttgcaacaagtattattctggttttgagattcatctgtagaagggaaaca 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21019 cttcatcgccttgcaacaagtattattctggttttgagattcatctgtagaagggaaaca 20960
Query: 513 ttccctgatcataccccaagcgccgaaccctattatgttgccaagtctatgacccaaaat 572
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 20959 ttccctgatcataccccaagcgccgaaccctattattttgccaagtctatgacccaaaat 20900
Query: 573 gatagaccctttatcgtccctcttgatagatctagaaccggnggtagaagagttcaagta 632
|| ||||||||||||||||||||||| ||| |||||||||| |||| |||||||||||||
Sbjct: 20899 gaaagaccctttatcgtccctcttgaaagaactagaaccgggggtaaaagagttcaagta 20840
Query: 633 tttcgatgcaactgatccatgtctgcatctcacgttatgtgttgagccactgtggactta 692
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 20839 tttcgatgcaactgatccatgtctggatctcacgttatgtgttgagccactgtgg-ctta 20781
Query: 693 attnctcacgtttcaaaatgttcataattagtctnatagtcatgggtgggaacatcnaat 752
||| ||||||||||||||||||||||| |||||| |||||||||| ||||| | |||
Sbjct: 20780 atttctcacgtttcaaaatgttcataa-tagtcttatagtcatggttggga--cttaaat 20724
Query: 753 cctggnatgatcttcttnacgttggggataatggccatattnatgaaatccgatgggaat 812
||| | ||||||||||| ||||| |||| ||||| |||||| |||||||||||| |||||
Sbjct: 20723 cct-gtatgatcttctt-acgtt-gggaaaatgg-catattgatgaaatccgat-ggaat 20669
Query: 813 aaatctcataaatcta 828
| ||||||||| ||||
Sbjct: 20668 agatctcataattcta 20653
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5978
Number of Sequences: 1807
Number of extensions: 5978
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 987
length of database: 10,358,551
effective HSP length: 16
effective length of query: 971
effective length of database: 10,329,639
effective search space: 10030079469
effective search space used: 10030079469
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)