BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZD06RM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1330 0.0
>3x_Contig1801
Length = 57606
Score = 1330 bits (671), Expect = 0.0
Identities = 812/849 (95%), Gaps = 8/849 (0%)
Strand = Plus / Plus
Query: 48 agaggtatggtagataaagaaatcgtttacgctactgtcgatgttaataaacgtattgct 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18337 agaggtatggtagataaagaaatcgtttacgctactgtcgatgttaataaacgtattgct 18396
Query: 108 gattgtgctgatgcaaacgatctttatcgtctaatatgggagatccagatggatccattg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18397 gattgtgctgatgcaaacgatctttatcgtctaatatgggagatccagatggatccattg 18456
Query: 168 ctacgagataaggccactttgaagcactattaccacattatcaacagtccgaacttttct 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18457 ctacgagataaggccactttgaagcactattaccacattatcaacagtccgaacttttct 18516
Query: 228 gttgctaaatgtgcagaattactcgattgcatagatatgatcaaatattcaaagacagac 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18517 gttgctaaatgtgcagaattactcgattgcatagatatgatcaaatattcaaagacagac 18576
Query: 288 attatgatcatggccatatacaaattaaataaccccactgtcacaagcaaatatgtgaag 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18577 attatgatcatggccatatacaaattaaataaccccactgtcacaagcaaatatgtgaag 18636
Query: 348 gagttaattagcatatacccttcattgaaccagttctcgcagaaacttacgttgagaatc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18637 gagttaattagcatatacccttcattgaaccagttctcgcagaaacttacgttgagaatc 18696
Query: 408 ctacgcggtgcaaatagactccaggaactctttgatacacaaaacgatcaaattcataca 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18697 ctacgcggtgcaaatagactccaggaactctttgatacacaaaacgatcaaattcataca 18756
Query: 468 attacaggtaaccactctcaagtggtcatgatcttccaaaccttgttccgcagtgcttac 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18757 attacaggtaaccactctcaagtggtcatgatcttccaaaccttgttccgcagtgcttac 18816
Query: 528 aaatctgcggaacacctaatagacgatagcactgaactcactccactacagagatctttc 587
||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 18817 aaacttccggaacacctaatagacgaaagcactgaactcactccactacagagatctttc 18876
Query: 588 tgttcaagtgtcagagttttatcagaatattcctcagcacatccaatacttgccaaatgt 647
||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 18877 tgttcaagtgtaagagttttatcagaatattcctcagcacaaccaaaacttgccaaatgt 18936
Query: 648 tgctctcanatggtgatagcatcttgcatgaacataagt-agccattggcatatag-atc 705
|| ||||| ||||||| |||||||| |||||||| |||| |||||||| ||| || |||
Sbjct: 18937 tgttctcaaatggtgaaagcatctttcatgaaca-aagtaagccattgcaataaagaatc 18995
Query: 706 agagcattccatcaatattaatgaggtataaatgcctc-aatacatgggaagaaacgttg 764
|||||||||||||||||||||||| |||||||| |||| ||||||| |||||||||||||
Sbjct: 18996 agagcattccatcaatattaatga-gtataaattcctcaaatacat-ggaagaaacgttg 19053
Query: 765 gaagattgtctcantatcgctggactcgacgatttgtttctatgatccctgcagaaggat 824
||||||||||||| ||||||||||||||||||||| ||||||||| ||||||| |||||
Sbjct: 19054 gaagattgtctcaatatcgctggactcgacgattt-cttctatgattcctgcaggaggat 19112
Query: 825 cctatgctcgttgagtaggacttacaccggagattc-aaactagttctacggtggattta 883
|||||||||| |||| | ||||||||||| ||| || ||||| |||||||| ||||||
Sbjct: 19113 cctatgctcggtgagaaagacttacaccgaagaatctcaactaagtctacggttgattta 19172
Query: 884 gcatcattt 892
| |||||||
Sbjct: 19173 gtatcattt 19181
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5635
Number of Sequences: 1807
Number of extensions: 5635
Number of successful extensions: 24
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)