BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZD07FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1807 1263 0.0
>3x_Contig1807
Length = 66587
Score = 1263 bits (637), Expect = 0.0
Identities = 697/709 (98%), Gaps = 6/709 (0%)
Strand = Plus / Plus
Query: 87 atcgacacctttgactcccacaagactcaaaagttcaggtgcataaattgtgattgcatt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5827 atcgacacctttgactcccacaagactcaaaagttcaggtgcataaattgtgattgcatt 5886
Query: 147 tgcaccagaccattgacccaaaatttggaccaaacatgcgataacaaagaacctgtatct 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5887 tgcaccagaccattgacccaaaatttggaccaaacatgcgataacaaagaacctgtatct 5946
Query: 207 aacagatttgacaaaaattatctcttttaccatatcaaggtaaccagtgcctgacatagt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5947 aacagatttgacaaaaattatctcttttaccatatcaaggtaaccagtgcctgacatagt 6006
Query: 267 ctctttctcttgaataatctggtatctgatatcagcgacttcacctgcaatgaaagggtg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6007 ctctttctcttgaataatctggtatctgatatcagcgacttcacctgcaatgaaagggtg 6066
Query: 327 cgtttcggataaattacgcaatttggccaagtttataattgccttgtcatccttgcccat 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6067 cgtttcggataaattacgcaatttggccaagtttataattgccttgtcatccttgcccat 6126
Query: 387 tttcattaaccatctcggactctcaatacaccatataaatgatccaaccaagataagtcc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6127 tttcattaaccatctcggactctcaatacaccatataaatgatccaaccaagataagtcc 6186
Query: 447 tgcaagaacaattttgattgaagttggcgcgacccactgcaatctactggtattagagac 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6187 tgcaagaacaattttgattgaagttggcgcgacccactgcaatctactggtattagagac 6246
Query: 507 atggagagctgtcccatagtttgcaaaatatgccaacataataccaaaatacacggcacc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6247 atggagagctgtcccatagtttgcaaaatatgccaacataataccaaaatacacggcacc 6306
Query: 567 ggcaaacagacatcctgtcaaacctctgatttgttttacagagactttcgatagataaac 626
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 6307 ggcaaacagacatcctgtcaaacctctgatttgttttacagagacttccgatagataaac 6366
Query: 627 tggcccaatgggtggttgtctggccgatgggcagaccttcgataagtcttcctgcatata 686
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 6367 tggcccaat-ggtggttgtctggccgatggcaagaccttcgataagtcttcctgcatata 6425
Query: 687 gttgtccgacattctttgatgttatttgggataattgccccaacgatttaataatacaca 746
||||||||||||||||||||||||||| |||||||||||||||||| || |||| |||||
Sbjct: 6426 gttgtccgacattctttgatgttattt-ggataattgccccaacga-ttcataaaacaca 6483
Query: 747 aacgccttgcaacggcctttatttctaccaaattttttccacagtatac 795
||||||||||||| ||||||| |||||||||| ||| ||||||||||||
Sbjct: 6484 aacgccttgcaac-gccttta-ttctaccaaa-tttctccacagtatac 6529
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6665
Number of Sequences: 1807
Number of extensions: 6665
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)