BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZD07RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1807 1314 0.0
>3x_Contig1807
Length = 66587
Score = 1314 bits (663), Expect = 0.0
Identities = 717/730 (98%), Gaps = 4/730 (0%)
Strand = Plus / Minus
Query: 48 cttgatgggctttgattaatctttgagcagctaatggatcatcaacttcggtaggttctt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59121 cttgatgggctttgattaatctttgagcagctaatggatcatcaacttcggtaggttctt 59062
Query: 108 cccaggacaagtactcgttagtgtagtttgatttgaaatcagttggaaggatatccaaac 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59061 cccaggacaagtactcgttagtgtagtttgatttgaaatcagttggaaggatatccaaac 59002
Query: 168 gcttaccgtaagcagtaacctttctccagtcacgatggacgttgtacaaggaagaggaga 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59001 gcttaccgtaagcagtaacctttctccagtcacgatggacgttgtacaaggaagaggaga 58942
Query: 228 agtaagcgaaacatctttggaattgcttgtaactcaatgggtcgttcaattgaggcttga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58941 agtaagcgaaacatctttggaattgcttgtaactcaatgggtcgttcaattgaggcttga 58882
Query: 288 agtcaacgtaatccttccatgcttgttcaggatcttgcaaaaccaagtcagttgctttct 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58881 agtcaacgtaatccttccatgcttgttcaggatcttgcaaaaccaagtcagttgctttct 58822
Query: 348 tgatagcattcaagaacttcttaaccttgacagggttttcagccaagaatttgtcattgg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58821 tgatagcattcaagaacttcttaaccttgacagggttttcagccaagaatttgtcattgg 58762
Query: 408 cgatgtacaagatggtacagaaacaacaacatcccaaacatgcaagttcgtcaattctca 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58761 cgatgtacaagatggtacagaaacaacaacatcccaaacatgcaagttcgtcaattctca 58702
Query: 468 acatcttagcgtcctttggatctctgcctttttccttcaagtattcttcaagttgaactt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58701 acatcttagcgtcctttggatctctgcctttttccttcaagtattcttcaagttgaactt 58642
Query: 528 gttgcatacattcaataccaacaccagcatcgatcttaccttcaatgatgtatttggcaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58641 gttgcatacattcaataccaacaccagcatcgatcttaccttcaatgatgtatttggcaa 58582
Query: 588 cgttcataccacatctgacagctttcgt-atccgttggtttcataccgntatgtttggtc 646
|||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||
Sbjct: 58581 cgttcataccacatctgacagc-ttcgtaatccgttggtttcataccgtaatgtttggtc 58523
Query: 647 aattcatcgatttgaatctta-cggattcaccaacgtattcgattttcttacccttcaaa 705
||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct: 58522 aattcatcgatttgaatcttaccgaattcaccaacgtatccgattttcttacccttcaaa 58463
Query: 706 gagttgaagtccttgggtatacccgctacctttcaagtacaagacaccggtgaatgggtc 765
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||| ||
Sbjct: 58462 gagttgaagt-cttgggtaataccgctaccttccaagtacaagacaccggtgaatggctc 58404
Query: 766 gtccaataaa 775
||||||||||
Sbjct: 58403 gtccaataaa 58394
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6969
Number of Sequences: 1807
Number of extensions: 6969
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)