BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZD08FM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1475 1308 0.0
3x_Contig1585 246 7e-65
3x_Contig352 167 5e-41
>3x_Contig1475
Length = 10676
Score = 1308 bits (660), Expect = 0.0
Identities = 720/734 (98%), Gaps = 6/734 (0%)
Strand = Plus / Plus
Query: 87 tgccacattctctgccaaaagttgtaagacgaatttttggatattatcactcattcttct 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8516 tgccacattctctgccaaaagttgtaagacgaatttttggatattatcactcattcttct 8575
Query: 147 accttcttcaacagcgttcaaaatagatgcaaagttatcgtcactcaaaacgatgtcaga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8576 accttcttcaacagcgttcaaaatagatgcaaagttatcgtcactcaaaacgatgtcaga 8635
Query: 207 tgcatccttggcaacatcagaaccattaatacccatagcaataccaacgttagcaatttt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8636 tgcatccttggcaacatcagaaccattaatacccatagcaataccaacgttagcaatttt 8695
Query: 267 caatgatggtgaatcgttaacaccatcacctgtcatggcacagaacttgcttctacgatg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8696 caatgatggtgaatcgttaacaccatcacctgtcatggcacagaacttgcttctacgatg 8755
Query: 327 taatgcctcaatcatacggaccttggtctgtggggcacaacgagcaatgactaaaggcaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8756 taatgcctcaatcatacggaccttggtctgtggggcacaacgagcaatgactaaaggcaa 8815
Query: 387 aacacgtaaatcatcaatttcttgatcacttaaagcatcgaaatcagttgcggccataac 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8816 aacacgtaaatcatcaatttcttgatcacttaaagcatcgaaatcagttgcggccataac 8875
Query: 447 catgaaatttaccacttcctttggataatggtataagttatgaggtaagataccaacttc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8876 catgaaatttaccacttcctttggataatggtataagttatgaggtaagataccaacttc 8935
Query: 507 ttgagcaatggacttggcagtaccagggaagtcacctgttaacatatgcacattgattcc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8936 ttgagcaatggacttggcagtaccagggaagtcacctgttaacatatgcacattgattcc 8995
Query: 567 agcttgatgacattttttaacagcggcaagtgattcttgtcttggtggatcatatatacc 626
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 8996 agcttgatgacattttttaacagcggcaagtgattcttgtcttggtggatcataaatacc 9055
Query: 627 gatcaaaccct--aaatgttaatttacattcgancaagtcacgttccttcaatagtttat 684
|||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 9056 gatc-aaccctaaaaatgttaatttacattcgacaaagtcacgttccttcaatagtttat 9114
Query: 685 cctttgttggccgttgatttccgattcgttaaaacttttcttaacaaaggctaacactct 744
|| ||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 9115 cc-ttgttgg-cgttgaattccgattcgttaaaacttttcttagcaaaggctaacactct 9172
Query: 745 taacccttcactagacagggtgttcacgttcttttgaatggtttccaaattttcctta-t 803
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
Sbjct: 9173 taacccttcactagacagggtgtcaacgttcttttgaatggtttccaaatcttccttact 9232
Query: 804 caaaggcgatggtt 817
||||||||||||||
Sbjct: 9233 caaaggcgatggtt 9246
>3x_Contig1585
Length = 11490
Score = 246 bits (124), Expect = 7e-65
Identities = 211/240 (87%)
Strand = Plus / Minus
Query: 87 tgccacattctctgccaaaagttgtaagacgaatttttggatattatcactcattcttct 146
||||||||| ||||| |||||||||| ||||||||| ||||| ||||| |||||||||||
Sbjct: 293 tgccacattttctgctaaaagttgtaggacgaatttctggatgttatcgctcattcttct 234
Query: 147 accttcttcaacagcgttcaaaatagatgcaaagttatcgtcactcaaaacgatgtcaga 206
||||||||| ||||| || |||||||| ||||||||||| || ||||| || ||||||||
Sbjct: 233 accttcttctacagcatttaaaatagaagcaaagttatcatcgctcaacacaatgtcaga 174
Query: 207 tgcatccttggcaacatcagaaccattaatacccatagcaataccaacgttagcaatttt 266
|||||||| ||||| ||||||||||| || ||||| ||||||||||| || ||||| ||
Sbjct: 173 cgcatccttcgcaacgtcagaaccattgattcccatggcaataccaacattggcaatctt 114
Query: 267 caatgatggtgaatcgttaacaccatcacctgtcatggcacagaacttgcttctacgatg 326
||| |||||||||||||| |||||||| |||||||||||||||||| || ||| ||||||
Sbjct: 113 caacgatggtgaatcgttcacaccatctcctgtcatggcacagaacctgtttcgacgatg 54
>3x_Contig352
Length = 1459
Score = 167 bits (84), Expect = 5e-41
Identities = 171/199 (85%), Gaps = 1/199 (0%)
Strand = Plus / Plus
Query: 491 gtaagataccaacttcttgagcaatggacttggcagtaccagggaagtcacctgttaaca 550
||||||| || ||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct: 19 gtaagatgcccacttcttgagctatagacttggcagtaccagggaagtcacctgtcaaca 78
Query: 551 tatgcacattgattccagcttgatgacattttttaacagcggcaagtgattcttgtcttg 610
|||| || ||||| |||||| | ||||||||||||||||| ||||| ||||| | ||||
Sbjct: 79 tatggacgttgataccagctaggtgacattttttaacagcagcaagcgattcgcgccttg 138
Query: 611 gtggatcatatataccgatcaaaccc-taaatgttaatttacattcgancaagtcacgtt 669
||||||| |||||||||| || ||| |||||||| ||| ||||| ||||||||||
Sbjct: 139 gtggatcgtatataccgactaatcccaaaaatgttagattattttcgacaaagtcacgtt 198
Query: 670 ccttcaatagtttatcctt 688
||||||||||||| |||||
Sbjct: 199 ccttcaatagtttgtcctt 217
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6311
Number of Sequences: 1807
Number of extensions: 6311
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 3
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)