BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZD08RM1.SCF screened BAC_end
(899 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1494 1354 0.0
>3x_Contig1494
Length = 10561
Score = 1354 bits (683), Expect = 0.0
Identities = 768/794 (96%), Gaps = 2/794 (0%)
Strand = Plus / Minus
Query: 40 actagtatcgacaatatccatcttctacaaagtaattcgagtctttaatatctaacactc 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8852 actagtatcgacaatatccatcttctacaaagtaattcgagtctttaatatctaacactc 8793
Query: 100 aggctctggaatctagtaatcttgatccaaatttaattttttcactgccaccaaagcaac 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8792 aggctctggaatctagtaatcttgatccaaatttaattttttcactgccaccaaagcaac 8733
Query: 160 tgtatgaaatgcacagtttcaataaagaatcaacaaaatacaagttgaaccgtaaactta 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8732 tgtatgaaatgcacagtttcaataaagaatcaacaaaatacaagttgaaccgtaaactta 8673
Query: 220 gtagacttagagttctacaagcatcccaaaatattaaatacagtagacatctgaaaaaaa 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8672 gtagacttagagttctacaagcatcccaaaatattaaatacagtagacatctgaaaaaaa 8613
Query: 280 aacagaacacacgaagaatcaaactataaaacctacaagtaccgtatatatctaaaaccc 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8612 aacagaacacacgaagaatcaaactataaaacctacaagtaccgtatatatctaaaaccc 8553
Query: 340 ttctgtctttgaaatactcaaaatgtgtttccatttgtaatacaagtttaaatttcaaat 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8552 ttctgtctttgaaatactcaaaatgtgtttccatttgtaatacaagtttaaatttcaaat 8493
Query: 400 cccaaaatttcatgcatacatttttttttctatatgacaaacggaaaatctgaataataa 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8492 cccaaaatttcatgcatacatttttttttctatatgacaaacggaaaatctgaataataa 8433
Query: 460 tgtgatatatacgcatctatatgttgccatgagcctcttggtgttaatatcttgtaatcg 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8432 tgtgatatatacgcatctatatgttgccatgagcctcttggtgttaatatcttgtaatcg 8373
Query: 520 ccgtcatgaacggatagttatctgggattcactagaattgatactatgttgnatccttag 579
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 8372 ccgtcatgaacggatagttatctgggattcactagaattgatactatgttgtatccttag 8313
Query: 580 tttctactactctcgttaattcccaagtttatgctataaatttgacatttgtcagatcta 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8312 tttctactactctcgttaattcccaagtttatgctataaatttgacatttgtcagatcta 8253
Query: 640 cgaatattttcgtcacacacaacccatagttacatgaaaagatttctaagtttggattac 699
||||||| | |||||||||||||| ||||| |||||||||||| |||||||||| |||||
Sbjct: 8252 cgaatatctccgtcacacacaaccaatagtaacatgaaaagatatctaagtttgaattac 8193
Query: 700 actccagacgttttaccacggatttcgagtggtccctcaagaa-gttaacaatcgcagca 758
||||||||||| |||||||||||||||||| |||| ||||| ||||||||||||||||
Sbjct: 8192 actccagacgtattaccacggatttcgagttgtcctcaaagaatgttaacaatcgcagca 8133
Query: 759 ttagaccagccttggaagt-ttaccggatttgctcctatcatttgaaaaaaagaacggtt 817
|||| || | | ||||| |||| | ||||||| |||||||||||| || |||||||||
Sbjct: 8132 atagagcaagcattgaagtattactgtatttgcttctatcatttgaagaagagaacggtt 8073
Query: 818 tttaaattaaaggg 831
|||||| |||||||
Sbjct: 8072 tttaaaataaaggg 8059
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,032
Number of Sequences: 1807
Number of extensions: 14032
Number of successful extensions: 89
Number of sequences better than 1.0e-20: 1
length of query: 899
length of database: 10,358,551
effective HSP length: 16
effective length of query: 883
effective length of database: 10,329,639
effective search space: 9121071237
effective search space used: 9121071237
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)