BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZD09FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1712 1124 0.0
>3x_Contig1712
Length = 23668
Score = 1124 bits (567), Expect = 0.0
Identities = 604/611 (98%), Gaps = 4/611 (0%)
Strand = Plus / Plus
Query: 86 cacaagtaattctcatctctgtttgacgggttcacctcagtcggactcccactaattcaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5506 cacaagtaattctcatctctgtttgacgggttcacctcagtcggactcccactaattcaa 5565
Query: 146 ttctagcccttacaaaattcaaactgtgcacttcaccagttttctttgtttatggctcca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5566 ttctagcccttacaaaattcaaactgtgcacttcaccagttttctttgtttatggctcca 5625
Query: 206 gcatgttatcattctcttccgatctttgcagcaagcactaatggcaaaattgaaaccgca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5626 gcatgttatcattctcttccgatctttgcagcaagcactaatggcaaaattgaaaccgca 5685
Query: 266 ttaattcttttcttttccttcaacatatacaggctgttttcttcgcctaattacgtttgc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5686 ttaattcttttcttttccttcaacatatacaggctgttttcttcgcctaattacgtttgc 5745
Query: 326 tctctacctagttattagtttttgatttatatctccgcttccacctaagagatcatatca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5746 tctctacctagttattagtttttgatttatatctccgcttccacctaagagatcatatca 5805
Query: 386 cctaaaagatattaattgaaatatcgggggtatgcatccgttggtatgtatcattatcgt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5806 cctaaaagatattaattgaaatatcgggggtatgcatccgttggtatgtatcattatcgt 5865
Query: 446 ttaattcacaaaatacttccacagtttaacggctcgacaacattattttaagatcaacac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5866 ttaattcacaaaatacttccacagtttaacggctcgacaacattattttaagatcaacac 5925
Query: 506 tgataaagctcctctaatacgcatcgagttcatctgtaatttgaaaagtactttaccttt 565
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 5926 tgataaggctcctctaatacgcatcgagttcatctgtaatttggaaagtactttaccttt 5985
Query: 566 gcaagtcaaactccattttttaaaccccgatatagaaaagttgcaactgcagagccattc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5986 gcaagtcaaactccattttttaaaccccgatatagaaaagttgcaactgcagagccattc 6045
Query: 626 tgttaaaacgga-ttcagaatgtc-tatttctggctgctgggtactaaataaaga-attc 682
|||||||||||| ||||| ||||| ||||||||||||||| |||||||||||||| ||||
Sbjct: 6046 tgttaaaacggatttcag-atgtcttatttctggctgctgtgtactaaataaagacattc 6104
Query: 683 tacctgatatt 693
|||||||||||
Sbjct: 6105 tacctgatatt 6115
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8420
Number of Sequences: 1807
Number of extensions: 8420
Number of successful extensions: 84
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)