BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZD09RM1.SCF screened BAC_end
(962 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1494 1384 0.0
>3x_Contig1494
Length = 10561
Score = 1384 bits (698), Expect = 0.0
Identities = 828/861 (96%), Gaps = 8/861 (0%)
Strand = Plus / Minus
Query: 48 cactagtatcgacaatatccatcttctacaaagtaattcgagtctttaatatctaacact 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8853 cactagtatcgacaatatccatcttctacaaagtaattcgagtctttaatatctaacact 8794
Query: 108 caggctctggaatctagtaatcttgatccaaatttaattttttcactgccaccaaagcaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8793 caggctctggaatctagtaatcttgatccaaatttaattttttcactgccaccaaagcaa 8734
Query: 168 ctgtatgaaatgcacagtttcaataaagaatcaacaaaatacaagttgaaccgtaaactt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8733 ctgtatgaaatgcacagtttcaataaagaatcaacaaaatacaagttgaaccgtaaactt 8674
Query: 228 agtagacttagagttctacaagcatcccaaaatattaaatacagtagacatctgaaaaaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8673 agtagacttagagttctacaagcatcccaaaatattaaatacagtagacatctgaaaaaa 8614
Query: 288 aaacagaacacacgaagaatcaaactataaaacctacaagtaccgtatatatctaaaacc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8613 aaacagaacacacgaagaatcaaactataaaacctacaagtaccgtatatatctaaaacc 8554
Query: 348 cttctgtctttgaaatactcaaaatgtgtttccatttgtaatacaagtttaaatttcaaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8553 cttctgtctttgaaatactcaaaatgtgtttccatttgtaatacaagtttaaatttcaaa 8494
Query: 408 tcccaaaatttcatgcatacatttttttttctatatgacaaacggaaaatctgaataata 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8493 tcccaaaatttcatgcatacatttttttttctatatgacaaacggaaaatctgaataata 8434
Query: 468 atgtgatatatacgcatctatatgttgccatgagcctcttggtgttaatatcttgtaatc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8433 atgtgatatatacgcatctatatgttgccatgagcctcttggtgttaatatcttgtaatc 8374
Query: 528 gccgtcatgaacggatagttatctgggattcactagaattgatactatgttgnatcccta 587
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 8373 gccgtcatgaacggatagttatctgggattcactagaattgatactatgttgtatcctta 8314
Query: 588 gtttctactactctcgttaattcccaagtttatgctatatatttgacatttgtcagatct 647
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 8313 gtttctactactctcgttaattcccaagtttatgctataaatttgacatttgtcagatct 8254
Query: 648 acgaatatctgcgttacacacaaccaatagtaacatgaaaagatatctatgtttg-atta 706
|||||||||| ||| |||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 8253 acgaatatctccgtcacacacaaccaatagtaacatgaaaagatatctaagtttgaatta 8194
Query: 707 cactccagacgtattaccacggatttcgagttgtccttaaag-atgtttaacattgcacc 765
||||||||||||||||||||||||||||||||||||| |||| ||||| | || ||| |
Sbjct: 8193 cactccagacgtattaccacggatttcgagttgtcctcaaagaatgttaacaatcgcagc 8134
Query: 766 aatagagc-agcattgaagatttaccggattggcttctatcattggaag-agagaacggt 823
|||||||| |||||||||| |||| | ||| |||||||||||| |||| ||||||||||
Sbjct: 8133 aatagagcaagcattgaagtattactgtatttgcttctatcatttgaagaagagaacggt 8074
Query: 824 tttt-aaataaa-ggttcatccgtctgt-atagcccgaaa-ttcggatcaaaggtttttt 879
|||| ||||||| ||| ||||||||||| |||||| ||| ||||||||| | |||| ||
Sbjct: 8073 ttttaaaataaagggtccatccgtctgtaatagccgtaaatttcggatcagatgtttctt 8014
Query: 880 ttttttccttccgttaactac 900
||||| |||||||||||||||
Sbjct: 8013 tttttcccttccgttaactac 7993
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,487
Number of Sequences: 1807
Number of extensions: 15487
Number of successful extensions: 95
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)