BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZD10FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig283 823 0.0
3x_Contig1310 517 e-146
>3x_Contig283
Length = 1176
Score = 823 bits (415), Expect = 0.0
Identities = 498/519 (95%), Gaps = 5/519 (0%)
Strand = Plus / Minus
Query: 322 aatgatgctgatatgttacaaatcgaagtgaaaccagaacctgcagacgatactgaaatc 381
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1176 aatgatgatgatatgttacaaatcgaagtgaaac-agaacctgcagacgatactgaaatc 1118
Query: 382 tttttgaaattcgatgaagatgatgaaccaaatagagacttcatcaaaaatctttcctct 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1117 tttttgaaattcgatgaagatgatgaaccaaatagagacttcatcaaaaatctttcctct 1058
Query: 442 tcaaggatggttcagacctcttctttgagttctcgtgcaagtttgacagatgaagacgat 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 tcaaggatggttcagacctcttctttgagttctcgtgcaagtttgacagatgaagacgat 998
Query: 502 ctgttactatcatcatctaccccaagttctttattctctaccgacttaaatcgtaccgtg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997 ctgttactatcatcatctaccccaagttctttattctctaccgacttaaatcgtaccgtg 938
Query: 562 agcaatcaacttcttttc-attcatctaccttgacgaatacaggatcaagtccaagtagt 620
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 agcaatcaacttctttccaattcatctaccttgacgaatacaggatcaagtccaagtagt 878
Query: 621 agccacacatcaaataagagcttaccaaattctcagtttctctgatactattgaagctat 680
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 877 agccacacatcaaataagagcttaccaaattctcag-ttctctgatactattgaagctat 819
Query: 681 gaaattcttggatggttatgagcaaatggagttctattccaaatacaaactttcgaatta 740
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 818 gaaattcttggatggttatgagcaaatggagttctattccaaatacaaactttcgacttc 759
Query: 741 acattctcagaaacccttggaatctatccaaagccttagggtgaatcaccactcttaccc 800
||||||||| |||| ||| ||||||| |||| |||| ||| |||||||||| |||||
Sbjct: 758 acattctcaagaacctttgaaatctatacaaaagcttaaggtagatcaccactc-taccc 700
Query: 801 atcaggatgaattgggattgccttaaagaagaaaaccca 839
||||||||||||| ||||||| ||||||||||| |||||
Sbjct: 699 atcaggatgaatt-ggattgcattaaagaagaagaccca 662
>3x_Contig1310
Length = 7790
Score = 517 bits (261), Expect = e-146
Identities = 261/261 (100%)
Strand = Plus / Minus
Query: 85 aagaaggagcttaccgatctagtgggtaacttacaggaattgaaacgtcagttccctatc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaaggagcttaccgatctagtgggtaacttacaggaattgaaacgtcagttccctatc 202
Query: 145 gtaccagaagaatcaaattctaaatctccacataccatagtaccaagtgtcaacagcagt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtaccagaagaatcaaattctaaatctccacataccatagtaccaagtgtcaacagcagt 142
Query: 205 gttccaatgcaacagaagattcttccaaaaccaatgacaaataaatcgtaccatgagcca 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 gttccaatgcaacagaagattcttccaaaaccaatgacaaataaatcgtaccatgagcca 82
Query: 265 gtacatgtgaagcaagaacatactgagagattgcctcgtaaaagatctatcattgacaat 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 gtacatgtgaagcaagaacatactgagagattgcctcgtaaaagatctatcattgacaat 22
Query: 325 gatgctgatatgttacaaatc 345
|||||||||||||||||||||
Sbjct: 21 gatgctgatatgttacaaatc 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7777
Number of Sequences: 1807
Number of extensions: 7777
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 2
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)