BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZD10RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1337 1243 0.0
>3x_Contig1337
Length = 7771
Score = 1243 bits (627), Expect = 0.0
Identities = 677/690 (98%), Gaps = 3/690 (0%)
Strand = Plus / Minus
Query: 52 ctggtgataccaacggtatgattaaagtctgggatttagttaaacgtaattgtcaatgca 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7667 ctggtgataccaacggtatgattaaagtctgggatttagttaaacgtaattgtcaatgca 7608
Query: 112 ctattcaggaacatactacagctgttagagggctagatttccgtgtcactgatgaagaaa 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7607 ctattcaggaacatactacagctgttagagggctagatttccgtgtcactgatgaagaaa 7548
Query: 172 agggaacgctgcagttattatctggtggtagagacaatatcttaaatctcttcgagttta 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7547 agggaacgctgcagttattatctggtggtagagacaatatcttaaatctcttcgagttta 7488
Query: 232 attcgacgaaaaagtataagctactgaagaccatccctgtcatagaacaggtggaatcgt 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7487 attcgacgaaaaagtataagctactgaagaccatccctgtcatagaacaggtggaatcgt 7428
Query: 292 gtggatttacgcaggacccggatgtggtttactcagccggtggtggtgccatttaccaat 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7427 gtggatttacgcaggacccggatgtggtttactcagccggtggtggtgccatttaccaat 7368
Query: 352 tagtgtccttgtcaacaggaagagtattaaagaaaacagcaaaacctattgaagagctat 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7367 tagtgtccttgtcaacaggaagagtattaaagaaaacagcaaaacctattgaagagctat 7308
Query: 412 ttattattggtacactatgtatcctgaacggaactaagcagtacttggtattttcagatc 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7307 ttattattggtacactatgtatcctgaacggaactaagcagtacttggtattttcagatc 7248
Query: 472 aaactntgttcctaatagatgttgaatcagctttacaatcggaatctgaagtaattgaag 531
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7247 aaactttgttcctaatagatgttgaatcagctttacaatcggaatctgaagtaattgaag 7188
Query: 532 tggaaaataagattgcaggtaatcatggtaccattgcagatataagattcgttggtccat 591
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7187 tggaaaataagattgcaggtaatcatggtaccattgcagatataagattcgttggtccaa 7128
Query: 592 aacgggataaattagcattagctactaactctcctactcttag-attattccacccccaa 650
||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||
Sbjct: 7127 aacgggataaattagcattagctactaactctcctactcttagaataattccaaccccaa 7068
Query: 651 cttc-tcggaggtagagttcgaaaatggggagaacaaggaaacatttcctatttgagtaa 709
|||| ||||||| |||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 7067 cttcttcggaggaagagttcgaaaatggggagaacaaagaaacatttcctattgaagtaa 7008
Query: 710 agatgttccagggtcatacgggatctactc 739
|||||| | |||||||||| ||||||||||
Sbjct: 7007 agatgtacgagggtcatac-ggatctactc 6979
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5639
Number of Sequences: 1807
Number of extensions: 5639
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)