BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC33ZD11FM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig630 1433 0.0
>3x_Contig630
Length = 2537
Score = 1433 bits (723), Expect = 0.0
Identities = 805/826 (97%), Gaps = 5/826 (0%)
Strand = Plus / Minus
Query: 85 catcactcatacaattacctctgcttttataataattctgtatacttatggtacgctacc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1222 catcactcatacaattacctctgcttttataataattctgtatacttatggtacgctacc 1163
Query: 145 gataatgagatcatcattcccaccccatcttttcaaacgcacataagtttcttctgtatc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1162 gataatgagatcatcattcccaccccatcttttcaaacgcacataagtttcttctgtatc 1103
Query: 205 tgttgaatctgtcgttctgaaacttttctgtatggaaagttatctcgcattcctggaact 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1102 tgttgaatctgtcgttctgaaacttttctgtatggaaagttatctcgcattcctggaact 1043
Query: 265 ttagaaacgttactaaaggaaaaacgaaaatgaagaaaagctggtaagccagggttcgaa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1042 ttagaaacgttactaaaggaaaaacgaaaatgaagaaaagctggtaagccagggttcgaa 983
Query: 325 cagaagtcttattttggacagaacttgaaaaaaaaatcgaaacgaaacatttcagttttt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 cagaagtcttattttggacagaacttgaaaaaaaaatcgaaacgaaacatttcagttttt 923
Query: 385 aaaggtcgaaccaacggttacgcagtgaagattgatatcatatagctgcacaatggatgg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 aaaggtcgaaccaacggttacgcagtgaagattgatatcatatagctgcacaatggatgg 863
Query: 445 atagagataagagaagagaaaaaagatcaacccattcgaagtgaacaggttgttaacttt 504
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 862 atagagataagagaagagaaaaaagatcaacccagtcgaagtgaacaggttgttaacttt 803
Query: 505 ggaagagcgtgtttcttttactttggaagagccaatctacagttaaaagaggtgactaca 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ggaagagcgtgtttcttttactttggaagagccaatctacagttaaaagaggtgactaca 743
Query: 565 ggtctattctatcacttggtgcaaattttttgcttcattatcaagggtccattttacatt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ggtctattctatcacttggtgcaaattttttgcttcattatcaagggtccattttacatt 683
Query: 625 ggtctcataagatcaaaacagcttttgcagttgttgggctggttatgcaaccttattaaa 684
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 682 ggtctcataagaacaaaacagcttttgcagttgttgggctggttaggcaaccttattaaa 623
Query: 685 atagtgctggtcatttattggtaaagtttacacatctgtttttgacaaatgtncattgaa 744
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 622 atagtgctggtcatttattgtaaaagtttacacatctgtttttgacaaatgtccattgaa 563
Query: 745 cagat-ttaaaggatttggaacaaaatctctt-ctaccta-tgagatactgcgatctggg 801
||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 562 cagatattaaaggatttggaacaaaatctcttcctacctagtgagatactgcgatctggg 503
Query: 802 -attagatttcagtccaatatcgatacattgacgatgcttatgttcaatcatgttgctgt 860
|| ||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 502 aataagatttcagtcaaatatcgatacattgacgatgcttatgttcagtcatgtggctgt 443
Query: 861 attatgtctgaaccatgtgcgaaag-aattcagacttaattgtctg 905
||||||||||| | || |||||| ||||||||||| ||||||||
Sbjct: 442 attatgtctgagcaattgtcgaaagaaattcagacttcattgtctg 397
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7806
Number of Sequences: 1807
Number of extensions: 7806
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)